{ "type": "genome", "identifier": "GCF_000262545.1", "organism": "Prevotella bivia DSM 20514", "title": "Prevotella bivia DSM 20514", "description": "na", "data type": "Genome sequencing and assembly", "organization": "JGI", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000262545.1", "bioproject": "PRJNA224116", "biosample": "SAMN02261368", "wgs_master": "AJVZ00000000.1", "refseq_category": "reference genome", "taxid": "868129", "species_taxid": "28125", "organism_name": "Prevotella bivia DSM 20514", "infraspecific_name": "strain=DSM 20514", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/05/29", "asm_name": "ASM26254v1", "asm_submitter": "JGI", "gbrs_paired_asm": "GCA_000262545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/262/545/GCF_000262545.1_ASM26254v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2521238", "genome_size_ungapped": "2520138", "gc_percent": "40.000000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000262545.1-RS_2025_01_08", "annotation_date": "2025-01-08", "total_gene_count": "2192", "protein_coding_gene_count": "2058", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-05-29", "dateModified": "2012-05-29", "datePublished": "2012-05-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotella bivia DSM 20514" ], "sample_taxid": [ "868129" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "Endometritis, Septic Arthritis" ], "sample_host_disease_id": [], "sample_host_location": [ "Missing" ], "sample_host_location_id": [], "data_size": "0.713 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2521238", "Number of Sequences": "3", "Longest Sequences (bp)": "1982184", "N50 (bp)": "1982184", "Gap Ratio (%)": "0.043629", "GCcontent (%)": "39.9", "Number of CDSs": "2087", "Average Protein Length": "341.6", "Coding Ratio (%)": "84.8", "Number of rRNAs": "12", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella bivia", "strain": "strain=DSM 20514", "accession": "GCA_000262545.1", "taxid": 28125, "species_taxid": 28125, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 838, "total_fragments": 839, "ani_threshold": 95, 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2608404, "species_taxid": 2608404, "relation_to_type": "type", "validated": true, "ani": 80.202, "matched_fragments": 161, "total_fragments": 839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella scopos", "strain": "strain=W2052", "accession": "GCA_018127785.1", "taxid": 589437, "species_taxid": 589437, "relation_to_type": "type", "validated": true, "ani": 80.1564, "matched_fragments": 173, "total_fragments": 839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella melaninogenica", "strain": "strain=FDAARGOS_1566", "accession": "GCA_020735785.1", "taxid": 28132, "species_taxid": 28132, "relation_to_type": "suspected-type", "validated": true, "ani": 79.3645, "matched_fragments": 174, "total_fragments": 839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella copri", "strain": "strain=DSM 18205", "accession": "GCA_025151535.1", "taxid": 165179, "species_taxid": 165179, "relation_to_type": 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