{ "type": "genome", "identifier": "GCF_000264415.1", "organism": "Planococcus antarcticus DSM 14505", "title": "Planococcus antarcticus DSM 14505", "description": "na", "data type": "Genome sequencing and assembly", "organization": "IPLA-CSIC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000264415.1", "bioproject": "PRJNA224116", "biosample": "SAMN02470076", "wgs_master": "AJYB00000000.1", "refseq_category": "na", "taxid": "1185653", "species_taxid": "161360", "organism_name": "Planococcus antarcticus DSM 14505", "infraspecific_name": "strain=DSM 14505", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/05/24", "asm_name": "ASM26441v1", "asm_submitter": "IPLA-CSIC", "gbrs_paired_asm": "GCA_000264415.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/264/415/GCF_000264415.1_ASM26441v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3772109", "genome_size_ungapped": "3772109", "gc_percent": "43.000000", "replicon_count": "0", "scaffold_count": "160", "contig_count": "160", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-07", "total_gene_count": "3802", "protein_coding_gene_count": "3621", "non_coding_gene_count": "63", "pubmed_id": "22843594" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-05-24", "dateModified": "2012-05-24", "datePublished": "2012-05-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Planococcus antarcticus DSM 14505" ], "sample_taxid": [ "1185653" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica: McMurdo" ], "sample_host_location_id": [], "data_size": "1.080 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3772109", "Number of Sequences": "160", "Longest Sequences (bp)": "185553", "N50 (bp)": "70480", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.0", "Number of CDSs": "3759", "Average Protein Length": "275.0", "Coding Ratio (%)": "82.2", "Number of rRNAs": "2", "Number of tRNAs": "52", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Planococcus antarcticus", "strain": "strain=DSM 14505", "accession": "GCA_000264415.1", "taxid": 161360, "species_taxid": 161360, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1187, "total_fragments": 1193, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Planococcus antarcticus", "strain": "strain=DSM 14505", "accession": "GCA_001687565.2", "taxid": 161360, "species_taxid": 161360, "relation_to_type": "type", "validated": true, "ani": 99.3667, "matched_fragments": 1133, "total_fragments": 1193, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Planococcus soli", "strain": "strain=c23", "accession": "GCA_016881065.1", "taxid": 2666072, "species_taxid": 2666072, "relation_to_type": "type", "validated": true, "ani": 83.6151, "matched_fragments": 878, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus faecalis", "strain": "strain=CECT 8759", "accession": "GCA_001856115.1", "taxid": 1598147, "species_taxid": 1598147, "relation_to_type": "suspected-type", "validated": true, "ani": 82.5312, "matched_fragments": 714, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus faecalis", "strain": "strain=AJ003", "accession": "GCA_002009235.1", "taxid": 1598147, "species_taxid": 1598147, "relation_to_type": "suspected-type", "validated": true, "ani": 82.5258, "matched_fragments": 726, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus wigleyi", "strain": "strain=Sa1BUA13", "accession": "GCA_014836985.1", "taxid": 2762216, "species_taxid": 2762216, "relation_to_type": "type", "validated": true, "ani": 81.7463, "matched_fragments": 748, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus versutus", "strain": "strain=L10.15", "accession": "GCA_001186155.3", "taxid": 1302659, "species_taxid": 1302659, "relation_to_type": "type", "validated": true, "ani": 81.4776, "matched_fragments": 606, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus halocryophilus", "strain": "strain=Or1", "accession": "GCA_000342445.1", "taxid": 1215089, "species_taxid": 1215089, "relation_to_type": "type", "validated": true, "ani": 81.2783, "matched_fragments": 648, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus halocryophilus", "strain": "strain=DSM 24743", "accession": "GCA_001687585.2", "taxid": 1215089, "species_taxid": 1215089, "relation_to_type": "type", "validated": true, "ani": 81.2661, "matched_fragments": 657, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus ruber", "strain": "strain=CGMCC 1.19134", "accession": "GCA_022819085.1", "taxid": 2027871, "species_taxid": 2027871, "relation_to_type": "type", "validated": true, "ani": 78.5973, "matched_fragments": 315, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001687565.2", "gtdb_species": "s__Planococcus antarcticus", "ani": 99.3708, "matched_fragments": 1133, "total_fragments": 1193, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.42", "min_intra_species_ani": "99.42", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_018613575.1", "gtdb_species": "s__Planococcus sp018613575", "ani": 84.5303, "matched_fragments": 886, "total_fragments": 1193, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { 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sp007859295", "ani": 82.4376, "matched_fragments": 792, "total_fragments": 1193, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014836985.1", "gtdb_species": "s__Planococcus sp014836985", "ani": 81.7429, "matched_fragments": 748, "total_fragments": 1193, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.16", "min_intra_species_ani": "97.16", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000189395.1", "gtdb_species": "s__Planococcus donghaensis_B", "ani": 81.3423, "matched_fragments": 598, 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"d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000785555.1", "gtdb_species": "s__Planococcus sp000785555", "ani": 81.1923, "matched_fragments": 616, "total_fragments": 1193, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.133, "cell_length": 0.056, "doubling_h": null, "growth_tmp": 25.0, "optimum_tmp": 4.0, "optimum_ph": 7.5, "genome_size": 3796494.25, "gc_content": 43.141, "coding_genes": 3498.0, "rRNA16S_genes": 9.0, "tRNA_genes": 71.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.8, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.666, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.333, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Planococcus", "antarcticus", "DSM", "14505" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }