{ "type": "genome", "identifier": "GCF_000264805.1", "organism": "Edwardsiella tarda ATCC 15947 = NBRC 105688", "title": "Edwardsiella tarda ATCC 15947 = NBRC 105688", "description": "na", "data type": "Genome sequencing and assembly", "organization": "State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000264805.1", "bioproject": "PRJNA224116", "biosample": "SAMN02469762", "wgs_master": "AFJG00000000.1", "refseq_category": "na", "taxid": "667121", "species_taxid": "636", "organism_name": "Edwardsiella tarda ATCC 15947 = NBRC 105688", "infraspecific_name": "strain=ATCC 15947", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/05/31", "asm_name": "ASM26480v1", "asm_submitter": "State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology", "gbrs_paired_asm": "GCA_000264805.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/264/805/GCF_000264805.1_ASM26480v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3694689", "genome_size_ungapped": "3694689", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "247", "contig_count": "247", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000264805.1-RS_2024_03_31", "annotation_date": "2024-03-31", "total_gene_count": "3461", "protein_coding_gene_count": "3329", "non_coding_gene_count": "24", "pubmed_id": "22590641" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-05-31", "dateModified": "2012-05-31", "datePublished": "2012-05-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Edwardsiella tarda ATCC 15947 = NBRC 105688" ], "sample_taxid": [ "667121" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Kentucky" ], "sample_host_location_id": [], "data_size": "1.059 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3694689", "Number of Sequences": "247", "Longest Sequences (bp)": "101524", "N50 (bp)": "24848", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.1", "Number of CDSs": "3243", "Average Protein Length": "310.2", "Coding Ratio (%)": "81.7", "Number of rRNAs": "0", "Number of tRNAs": "18", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Edwardsiella tarda", 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Edwardsiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.74", "min_intra_species_ani": "99.41", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.93", "num_clustered_genomes": 11, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 36.0, "optimum_tmp": 32.5, "optimum_ph": 7.0, "genome_size": 3723534.81, "gc_content": 57.927, "coding_genes": 3296.857, "rRNA16S_genes": 8.333, "tRNA_genes": 97.4, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 1.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Edwardsiella", "tarda", "ATCC", "15947", "=", "NBRC", "105688" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }