{
    "type": "genome",
    "identifier": "GCF_000265295.1",
    "organism": "Sulfurospirillum barnesii SES-3",
    "title": "Sulfurospirillum barnesii SES-3",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000265295.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02232056",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "760154",
        "species_taxid": "44674",
        "organism_name": "Sulfurospirillum barnesii SES-3",
        "infraspecific_name": "strain=SES-3",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2012/06/07",
        "asm_name": "ASM26529v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000265295.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/265/295/GCF_000265295.1_ASM26529v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2510109",
        "genome_size_ungapped": "2510109",
        "gc_percent": "39.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000265295.1-RS_2024_04_30",
        "annotation_date": "2024-04-30",
        "total_gene_count": "2560",
        "protein_coding_gene_count": "2498",
        "non_coding_gene_count": "51",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2012-06-07",
    "dateModified": "2012-06-07",
    "datePublished": "2012-06-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sulfurospirillum barnesii SES-3"
        ],
        "sample_taxid": [
            "760154"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "None"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.704 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2510109",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2510109",
        "N50 (bp)": "2510109",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "38.8",
        "Number of CDSs": "2524",
        "Average Protein Length": "311.7",
        "Coding Ratio (%)": "94.0",
        "Number of rRNAs": "4",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Sulfurospirillum barnesii",
                "strain": "strain=SES-3",
                "accession": "GCA_000265295.1",
                "taxid": 44674,
                "species_taxid": 44674,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 835,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Sulfurospirillum deleyianum",
                "strain": "strain=DSM 6946",
                "accession": "GCA_000024885.1",
                "taxid": 65553,
                "species_taxid": 65553,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.1865,
                "matched_fragments": 540,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sulfurospirillum halorespirans",
                "strain": "strain=DSM 13726; PCE-M2",
                "accession": "GCA_001723605.1",
                "taxid": 194424,
                "species_taxid": 194424,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0876,
                "matched_fragments": 426,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sulfurospirillum multivorans",
                "strain": "strain=DSM 12446",
                "accession": "GCA_000568815.1",
                "taxid": 66821,
                "species_taxid": 66821,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.017,
                "matched_fragments": 445,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sulfurospirillum arcachonense",
                "strain": "strain=DSM 9755",
                "accession": "GCA_000597725.1",
                "taxid": 57666,
                "species_taxid": 57666,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.533,
                "matched_fragments": 83,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000265295.1",
                "gtdb_species": "s__Sulfurospirillum barnesii",
                "ani": 100.0,
                "matched_fragments": 835,
                "total_fragments": 836,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurospirillaceae;g__Sulfurospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_016930915.1",
                "gtdb_species": "s__Sulfurospirillum sp016930915",
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                "matched_fragments": 566,
                "total_fragments": 836,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurospirillaceae;g__Sulfurospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.92",
                "min_intra_species_ani": "99.92",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_009930355.1",
                "gtdb_species": "s__Sulfurospirillum sp009930355",
                "ani": 86.0148,
                "matched_fragments": 404,
                "total_fragments": 836,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurospirillaceae;g__Sulfurospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000024885.1",
                "gtdb_species": "s__Sulfurospirillum deleyianum",
                "ani": 83.2085,
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                "total_fragments": 836,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurospirillaceae;g__Sulfurospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002309535.1",
                "gtdb_species": "s__Sulfurospirillum sp002309535",
                "ani": 79.7567,
                "matched_fragments": 391,
                "total_fragments": 836,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurospirillaceae;g__Sulfurospirillum",
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                "mean_intra_species_ani": "96.54",
                "min_intra_species_ani": "96.51",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002162315.1",
                "gtdb_species": "s__Sulfurospirillum sp002162315",
                "ani": 79.6722,
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                "total_fragments": 836,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurospirillaceae;g__Sulfurospirillum",
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                "mean_intra_species_ani": "99.96",
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                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017860615.1",
                "gtdb_species": "s__Sulfurospirillum sp017860615",
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                "matched_fragments": 407,
                "total_fragments": 836,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurospirillaceae;g__Sulfurospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001548035.1",
                "gtdb_species": "s__Sulfurospirillum sp001548035",
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                "matched_fragments": 384,
                "total_fragments": 836,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurospirillaceae;g__Sulfurospirillum",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002452855.1",
                "gtdb_species": "s__Sulfurospirillum sp002452855",
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                "matched_fragments": 169,
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                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurospirillaceae;g__Sulfurospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
        "cell_length": 0.0,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 31.5,
        "optimum_ph": 7.5,
        "genome_size": 2510109.25,
        "gc_content": 38.8,
        "coding_genes": 2482.0,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 41.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Sulfurospirillum",
        "barnesii",
        "SES-3"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}