{
    "type": "genome",
    "identifier": "GCF_000265425.1",
    "organism": "Terriglobus roseus DSM 18391",
    "title": "Terriglobus roseus DSM 18391",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "JGI",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000265425.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02261411",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "926566",
        "species_taxid": "392734",
        "organism_name": "Terriglobus roseus DSM 18391",
        "infraspecific_name": "strain=DSM 18391",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2012/06/08",
        "asm_name": "ASM26542v1",
        "asm_submitter": "JGI",
        "gbrs_paired_asm": "GCA_000265425.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/265/425/GCF_000265425.1_ASM26542v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5227858",
        "genome_size_ungapped": "5227858",
        "gc_percent": "60.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000265425.1-RS_2024_05_01",
        "annotation_date": "2024-05-01",
        "total_gene_count": "4317",
        "protein_coding_gene_count": "4235",
        "non_coding_gene_count": "62",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2012-06-08",
    "dateModified": "2012-06-08",
    "datePublished": "2012-06-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Terriglobus roseus DSM 18391"
        ],
        "sample_taxid": [
            "926566"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "None"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "1.471 MB",
        "sample_ph_range": {
            "min": 6.0,
            "max": 6.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 8.33,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5227858",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "5227858",
        "N50 (bp)": "5227858",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "60.3",
        "Number of CDSs": "4316",
        "Average Protein Length": "354.5",
        "Coding Ratio (%)": "87.8",
        "Number of rRNAs": "6",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Terriglobus roseus",
                "strain": "strain=DSM 18391",
                "accession": "GCA_000265425.1",
                "taxid": 392734,
                "species_taxid": 392734,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1685,
                "total_fragments": 1742,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bryocella elongata",
                "strain": "strain=DSM 22489",
                "accession": "GCA_900108185.1",
                "taxid": 863522,
                "species_taxid": 863522,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7035,
                "matched_fragments": 206,
                "total_fragments": 1742,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Terriglobus saanensis",
                "strain": "strain=SP1PR4",
                "accession": "GCA_000179915.2",
                "taxid": 870903,
                "species_taxid": 870903,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4858,
                "matched_fragments": 247,
                "total_fragments": 1742,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Granulicella mallensis",
                "strain": "strain=MP5ACTX8",
                "accession": "GCA_000178955.2",
                "taxid": 940614,
                "species_taxid": 940614,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3497,
                "matched_fragments": 201,
                "total_fragments": 1742,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Silvibacterium dinghuense",
                "strain": "strain=CGMCC 1.13007",
                "accession": "GCA_014640355.1",
                "taxid": 1560006,
                "species_taxid": 1560006,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3182,
                "matched_fragments": 154,
                "total_fragments": 1742,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Edaphobacter dinghuensis",
                "strain": "strain=CGMCC 1.12997",
                "accession": "GCA_014640335.1",
                "taxid": 1560005,
                "species_taxid": 1560005,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3141,
                "matched_fragments": 177,
                "total_fragments": 1742,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Granulicella rosea",
                "strain": "strain=DSM 18704",
                "accession": "GCA_900188085.1",
                "taxid": 474952,
                "species_taxid": 474952,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1793,
                "matched_fragments": 239,
                "total_fragments": 1742,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Silvibacterium dinghuense",
                "strain": "strain=DHOF10",
                "accession": "GCA_004123295.1",
                "taxid": 1560006,
                "species_taxid": 1560006,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1654,
                "matched_fragments": 158,
                "total_fragments": 1742,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Edaphobacter aggregans",
                "strain": "strain=DSM 19364",
                "accession": "GCA_000745965.1",
                "taxid": 570835,
                "species_taxid": 570835,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1298,
                "matched_fragments": 226,
                "total_fragments": 1742,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Edaphobacter modestus",
                "strain": "strain=DSM 18101",
                "accession": "GCA_004217555.1",
                "taxid": 388466,
                "species_taxid": 388466,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9601,
                "matched_fragments": 174,
                "total_fragments": 1742,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Edaphobacter flagellatus",
                "strain": "strain=HZ411",
                "accession": "GCA_025264665.1",
                "taxid": 1933044,
                "species_taxid": 1933044,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9459,
                "matched_fragments": 172,
                "total_fragments": 1742,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Occallatibacter riparius",
                "strain": "strain=DSM 25168",
                "accession": "GCA_025264625.1",
                "taxid": 1002689,
                "species_taxid": 1002689,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6582,
                "matched_fragments": 113,
                "total_fragments": 1742,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 8.33,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000265425.1",
                "gtdb_species": "s__Terriglobus roseus",
                "ani": 100.0,
                "matched_fragments": 1678,
                "total_fragments": 1742,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Terriglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900105625.1",
                "gtdb_species": "s__Terriglobus roseus_B",
                "ani": 82.6508,
                "matched_fragments": 1025,
                "total_fragments": 1742,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Terriglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000800015.1",
                "gtdb_species": "s__Terriglobus sp000800015",
                "ani": 78.2086,
                "matched_fragments": 457,
                "total_fragments": 1742,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Terriglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900102185.1",
                "gtdb_species": "s__Terriglobus roseus_A",
                "ani": 78.1961,
                "matched_fragments": 441,
                "total_fragments": 1742,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Terriglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903642225.1",
                "gtdb_species": "s__Terriglobus sp903642225",
                "ani": 77.4915,
                "matched_fragments": 195,
                "total_fragments": 1742,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Terriglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000179915.2",
                "gtdb_species": "s__Terriglobus saanensis",
                "ani": 77.4858,
                "matched_fragments": 247,
                "total_fragments": 1742,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Terriglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014201375.1",
                "gtdb_species": "s__Edaphobacter lichenicola_D",
                "ani": 77.401,
                "matched_fragments": 161,
                "total_fragments": 1742,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Edaphobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900188085.1",
                "gtdb_species": "s__Granulicella_C rosea",
                "ani": 77.1856,
                "matched_fragments": 239,
                "total_fragments": 1742,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Granulicella_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013410875.1",
                "gtdb_species": "s__Edaphobacter lichenicola_C",
                "ani": 77.1559,
                "matched_fragments": 168,
                "total_fragments": 1742,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Edaphobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009765785.1",
                "gtdb_species": "s__UBA5172 sp009765785",
                "ani": 77.1215,
                "matched_fragments": 133,
                "total_fragments": 1742,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__UBA5172",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002307235.1",
                "gtdb_species": "s__Terracidiphilus sp002307235",
                "ani": 76.3805,
                "matched_fragments": 88,
                "total_fragments": 1742,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Terracidiphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.155,
        "cell_length": 0.23,
        "doubling_h": 0.785,
        "growth_tmp": 25.0,
        "optimum_tmp": 23.0,
        "optimum_ph": 6.0,
        "genome_size": 5095428.5,
        "gc_content": 60.3,
        "coding_genes": 4220.0,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 53.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Terriglobus",
        "roseus",
        "DSM",
        "18391"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}