{ "type": "genome", "identifier": "GCF_000265525.1", "organism": "Thermococcus cleftensis", "title": "Thermococcus cleftensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyung Hee University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000265525.1", "bioproject": "PRJNA224116", "biosample": "SAMN02603492", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "163003", "species_taxid": "163003", "organism_name": "Thermococcus cleftensis", "infraspecific_name": "strain=CL1", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/06/11", "asm_name": "ASM26552v1", "asm_submitter": "Kyung Hee University", "gbrs_paired_asm": "GCA_000265525.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/265/525/GCF_000265525.1_ASM26552v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "archaea", "genome_size": "1950313", "genome_size_ungapped": "1950313", "gc_percent": "56.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000265525.1-RS_2024_10_21", "annotation_date": "2024-10-21", "total_gene_count": "2123", "protein_coding_gene_count": "2063", "non_coding_gene_count": "52", "pubmed_id": "22887670" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-06-11", "dateModified": "2012-06-11", "datePublished": "2012-06-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Thermococcus cleftensis" ], "sample_taxid": [ "163003" ], "sample_host_organism": [ "Paralvinella sp." ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean: Cleft Segment of the Juan de Fuca Ridge" ], "sample_host_location_id": [], "data_size": "0.550 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1950313", "Number of Sequences": "1", "Longest Sequences (bp)": "1950313", "N50 (bp)": "1950313", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.8", "Number of CDSs": "2083", "Average Protein Length": "284.0", "Coding Ratio (%)": "91.0", "Number of rRNAs": "4", "Number of tRNAs": "44", "Number of CRISPRs": "10" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thermococcus cleftensis", "strain": "strain=CL1", "accession": "GCA_000265525.1", "taxid": 163003, "species_taxid": 163003, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 650, "total_fragments": 650, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Thermococcus celericrescens", "strain": "strain=DSM 17994", "accession": "GCA_001484195.1", "taxid": 227598, "species_taxid": 227598, "relation_to_type": "type", "validated": true, "ani": 84.041, "matched_fragments": 460, "total_fragments": 650, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermococcus nautili", "strain": "strain=30-1", "accession": "GCA_000585495.1", "taxid": 195522, "species_taxid": 195522, "relation_to_type": "type", "validated": true, "ani": 81.3805, "matched_fragments": 409, "total_fragments": 650, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermococcus henrietii", "strain": "strain=EXT12c", "accession": "GCA_900198835.1", "taxid": 2016361, "species_taxid": 2016361, "relation_to_type": "type", "validated": true, "ani": 81.2468, "matched_fragments": 388, "total_fragments": 650, "ani_threshold": 95, "status": 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