{ "type": "genome", "identifier": "GCF_000269865.1", "organism": "Fictibacillus macauensis ZFHKF-1", "title": "Fictibacillus macauensis ZFHKF-1", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The University of Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000269865.1", "bioproject": "PRJNA224116", "biosample": "SAMN02471793", "wgs_master": "AKKV00000000.1", "refseq_category": "reference genome", "taxid": "1196324", "species_taxid": "245160", "organism_name": "Fictibacillus macauensis ZFHKF-1", "infraspecific_name": "strain=ZFHKF-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/06/18", "asm_name": "ASM26986v1", "asm_submitter": "The University of Hong Kong", "gbrs_paired_asm": "GCA_000269865.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/269/865/GCF_000269865.1_ASM26986v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3736359", "genome_size_ungapped": "3736359", "gc_percent": "40.500000", "replicon_count": "0", "scaffold_count": "55", "contig_count": "55", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000269865.1-RS_2024_03_27", "annotation_date": "2024-03-27", "total_gene_count": "3957", "protein_coding_gene_count": "3842", "non_coding_gene_count": "58", "pubmed_id": "22887677" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-06-18", "dateModified": "2012-06-18", "datePublished": "2012-06-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Fictibacillus macauensis ZFHKF-1" ], "sample_taxid": [ "1196324" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Macau" ], "sample_host_location_id": [], "data_size": "1.063 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3736359", "Number of Sequences": "55", "Longest Sequences (bp)": "392263", "N50 (bp)": "213431", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.6", "Number of CDSs": "3940", "Average Protein Length": "270.9", "Coding Ratio (%)": "85.7", "Number of rRNAs": "1", "Number of tRNAs": "51", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Fictibacillus macauensis", "strain": "strain=ZFHKF-1", "accession": "GCA_000269865.1", "taxid": 245160, "species_taxid": 245160, 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76.8392, "matched_fragments": 81, "total_fragments": 1218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus alkalisoli", "strain": "strain=FJAT-45122", "accession": "GCA_002797415.1", "taxid": 2011008, "species_taxid": 2011008, "relation_to_type": "type", "validated": true, "ani": 76.8293, "matched_fragments": 51, "total_fragments": 1218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus thuringiensis", "strain": "strain=ATCC 10792", "accession": "GCA_000161615.1", "taxid": 1428, "species_taxid": 1428, "relation_to_type": "suspected-type", "validated": true, "ani": 76.8177, "matched_fragments": 87, "total_fragments": 1218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus mycoides", "strain": "strain=DSM 2048", "accession": "GCA_022630575.1", "taxid": 1405, "species_taxid": 1405, "relation_to_type": "type", "validated": true, "ani": 76.705, "matched_fragments": 82, "total_fragments": 1218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lottiidibacillus patelloidae", "strain": "strain=SA5d-4", "accession": "GCA_002262935.1", "taxid": 2670334, "species_taxid": 2670334, "relation_to_type": "type", "validated": true, "ani": 76.6715, "matched_fragments": 61, "total_fragments": 1218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niallia alba", "strain": "strain=UniB3", "accession": "GCA_012933555.1", "taxid": 2729105, "species_taxid": 2729105, "relation_to_type": "type", "validated": true, "ani": 76.6096, "matched_fragments": 53, "total_fragments": 1218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus toyonensis", "strain": "strain=BCT-7112", "accession": "GCA_000496285.1", "taxid": 155322, "species_taxid": 155322, "relation_to_type": "type", "validated": true, "ani": 76.5055, "matched_fragments": 82, "total_fragments": 1218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus clarus", "strain": "strain=PS00077A", "accession": "GCA_003428195.1", "taxid": 2338372, "species_taxid": 2338372, "relation_to_type": "type", "validated": true, "ani": 76.4834, "matched_fragments": 78, "total_fragments": 1218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Priestia aryabhattai", "strain": "strain=B8W22", "accession": "GCA_000956595.1", "taxid": 412384, "species_taxid": 412384, "relation_to_type": "type", "validated": true, "ani": 76.4498, "matched_fragments": 71, "total_fragments": 1218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus thuringiensis", "strain": "strain=ATCC 10792", "accession": "GCA_002119445.1", "taxid": 1428, "species_taxid": 1428, "relation_to_type": "suspected-type", "validated": true, "ani": 76.4184, "matched_fragments": 78, "total_fragments": 1218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Priestia megaterium", "strain": "strain=ATCC 14581", "accession": "GCA_900113355.1", "taxid": 1404, "species_taxid": 1404, "relation_to_type": "suspected-type", "validated": true, "ani": 76.3588, "matched_fragments": 76, "total_fragments": 1218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus crassostreae", "strain": "strain=DSM 24486", "accession": "GCA_016908395.1", "taxid": 929098, "species_taxid": 929098, "relation_to_type": "type", "validated": true, "ani": 76.0851, "matched_fragments": 73, "total_fragments": 1218, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000269865.1", "gtdb_species": "s__Fictibacillus_C macauensis", "ani": 100.0, "matched_fragments": 1217, "total_fragments": 1218, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__Fictibacillaceae;g__Fictibacillus_C", "ani_circumscription_radius": 95.0, 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.59", "min_intra_species_ani": "99.45", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.91", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_016908395.1", "gtdb_species": "s__Metabacillus crassostreae", "ani": 75.9828, "matched_fragments": 70, "total_fragments": 1218, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Metabacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.097, "cell_length": 0.301, "doubling_h": null, "growth_tmp": 30.0, "optimum_tmp": 30.0, "optimum_ph": 8.5, "genome_size": 3736359.0, "gc_content": 40.195, "coding_genes": 4073.0, "rRNA16S_genes": 7.0, "tRNA_genes": 61.0, "gram_stain": 1.0, "sporulation": 1.0, 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