{ "type": "genome", "identifier": "GCF_000269985.1", "organism": "Kitasatospora setae KM-6054", "title": "Kitasatospora setae KM-6054", "description": "na", "data type": "Genome sequencing and assembly", "organization": "NITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000269985.1", "bioproject": "PRJNA224116", "biosample": "SAMD00060928", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "452652", "species_taxid": "2066", "organism_name": "Kitasatospora setae KM-6054", "infraspecific_name": "strain=KM-6054", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2010/11/11", "asm_name": "ASM26998v1", "asm_submitter": "NITE", "gbrs_paired_asm": "GCA_000269985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/269/985/GCF_000269985.1_ASM26998v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8783278", "genome_size_ungapped": "8783278", "gc_percent": "74.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000269985.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "7713", "protein_coding_gene_count": "7487", "non_coding_gene_count": "108", "pubmed_id": "21059706" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2010-11-11", "dateModified": "2010-11-11", "datePublished": "2010-11-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Kitasatospora setae KM-6054" ], "sample_taxid": [ "452652" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "2.286 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8783278", "Number of Sequences": "1", "Longest Sequences (bp)": "8783278", "N50 (bp)": "8783278", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "74.2", "Number of CDSs": "7827", "Average Protein Length": "329.5", "Coding Ratio (%)": "88.1", "Number of rRNAs": "27", "Number of tRNAs": "110", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kitasatospora setae", "strain": "strain=KM-6054", "accession": "GCA_000269985.1", "taxid": 2066, "species_taxid": 2066, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2905, "total_fragments": 2927, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kitasatospora setae", "strain": "strain=NRRL B-16185", "accession": "GCA_000716965.1", "taxid": 2066, "species_taxid": 2066, "relation_to_type": "type", "validated": true, "ani": 99.9383, "matched_fragments": 2734, "total_fragments": 2927, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kitasatospora phosalacinea", "strain": "strain=NRRL B-16230", "accession": "GCA_000716545.1", "taxid": 2065, "species_taxid": 2065, "relation_to_type": "type", "validated": true, "ani": 90.9393, "matched_fragments": 1946, "total_fragments": 2927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora cheerisanensis", "strain": "strain=KCTC 2395", "accession": "GCA_000696185.1", "taxid": 81942, "species_taxid": 81942, "relation_to_type": "type", "validated": true, "ani": 88.0267, "matched_fragments": 1951, "total_fragments": 2927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora griseola", "strain": "strain=JCM 3339", "accession": "GCA_014648555.1", "taxid": 2064, "species_taxid": 2064, "relation_to_type": "type", "validated": true, "ani": 87.8005, "matched_fragments": 1861, "total_fragments": 2927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora paracochleata", "strain": "strain=DSM 41656", "accession": "GCA_024172095.1", "taxid": 58354, "species_taxid": 58354, "relation_to_type": "type", "validated": true, "ani": 84.3646, "matched_fragments": 1664, "total_fragments": 2927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora purpeofusca", "strain": "strain=NRRL B-1817", "accession": "GCA_000718025.1", "taxid": 67352, "species_taxid": 67352, "relation_to_type": "type", "validated": true, "ani": 82.7286, "matched_fragments": 1689, "total_fragments": 2927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora humi", "strain": "strain=RB6PN24", "accession": "GCA_020907985.1", "taxid": 2893891, "species_taxid": 2893891, "relation_to_type": "type", "validated": true, "ani": 81.9008, "matched_fragments": 1334, "total_fragments": 2927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rubrisoli", "strain": "strain=DSM 42083", "accession": "GCA_024436055.1", "taxid": 1387313, "species_taxid": 1387313, "relation_to_type": "type", "validated": true, "ani": 79.0862, "matched_fragments": 980, "total_fragments": 2927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lichenis", "strain": "strain=LCR6-01", "accession": "GCA_023218175.1", "taxid": 2306967, "species_taxid": 2306967, "relation_to_type": "type", "validated": true, "ani": 79.0714, "matched_fragments": 1202, "total_fragments": 2927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinacidiphila alni", "strain": "strain=CGMCC 4.3510", "accession": "GCA_900112845.1", "taxid": 380248, "species_taxid": 380248, "relation_to_type": "type", "validated": true, "ani": 78.8926, "matched_fragments": 1249, "total_fragments": 2927, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000269985.1", "gtdb_species": "s__Kitasatospora setae", "ani": 100.0, "matched_fragments": 2910, "total_fragments": 2927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Kitasatospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_003751605.1", "gtdb_species": "s__Kitasatospora cineracea", "ani": 91.1573, "matched_fragments": 2109, "total_fragments": 2927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Kitasatospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.58", "min_intra_species_ani": "96.37", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.86", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000717185.1", "gtdb_species": "s__Kitasatospora phosalacinea_A", "ani": 90.983, "matched_fragments": 2034, "total_fragments": 2927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Kitasatospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000716545.1", "gtdb_species": "s__Kitasatospora phosalacinea", "ani": 90.9807, "matched_fragments": 1941, "total_fragments": 2927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Kitasatospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013364235.1", "gtdb_species": "s__Kitasatospora sp013364235", "ani": 90.9594, "matched_fragments": 2111, "total_fragments": 2927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Kitasatospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002813165.1", "gtdb_species": "s__Kitasatospora sp002813165", "ani": 90.5936, "matched_fragments": 2031, "total_fragments": 2927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Kitasatospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.28", "min_intra_species_ani": "97.28", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 27.5, "optimum_tmp": 27.571, "optimum_ph": 6.625, "genome_size": 8738812.8, "gc_content": 73.65, "coding_genes": 7394.667, "rRNA16S_genes": 9.0, "tRNA_genes": 72.0, "gram_stain": 1.0, "sporulation": 1.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.5, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.5, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Kitasatospora", "setae", "KM-6054" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }