{ "type": "genome", "identifier": "GCF_000270185.1", "organism": "Melissococcus plutonius ATCC 35311", "title": "Melissococcus plutonius ATCC 35311", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Center for Global Health and Medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000270185.1", "bioproject": "PRJNA224116", "biosample": "SAMD00060979", "wgs_master": "na", "refseq_category": "na", "taxid": "940190", "species_taxid": "33970", "organism_name": "Melissococcus plutonius ATCC 35311", "infraspecific_name": "strain=ATCC 35311", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/05/09", "asm_name": "ASM27018v1", "asm_submitter": "National Center for Global Health and Medicine", "gbrs_paired_asm": "GCA_000270185.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/270/185/GCF_000270185.1_ASM27018v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2068732", "genome_size_ungapped": "2068712", "gc_percent": "31.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-11", "total_gene_count": "1881", "protein_coding_gene_count": "1663", "non_coding_gene_count": "77", "pubmed_id": "21622755" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-05-09", "dateModified": "2011-05-09", "datePublished": "2011-05-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Melissococcus plutonius ATCC 35311" ], "sample_taxid": [ "940190" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.571 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2068732", "Number of Sequences": "2", "Longest Sequences (bp)": "1891014", "N50 (bp)": "1891014", "Gap Ratio (%)": "0.000967", "GCcontent (%)": "31.2", "Number of CDSs": "1926", "Average Protein Length": "283.4", "Coding Ratio (%)": "79.2", "Number of rRNAs": "12", "Number of tRNAs": "61", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Melissococcus plutonius", "strain": "strain=ATCC 35311", "accession": "GCA_000270185.1", "taxid": 33970, "species_taxid": 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"status": "below_threshold" }, { "organism_name": "Enterococcus ureilyticus", "strain": "strain=LMG 26676", "accession": "GCA_001730315.1", "taxid": 1131292, "species_taxid": 1131292, "relation_to_type": "type", "validated": true, "ani": 77.2203, "matched_fragments": 106, "total_fragments": 689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus saccharolyticus subsp. saccharolyticus", "strain": "strain=ATCC 43076", "accession": "GCA_000407285.1", "taxid": 1814218, "species_taxid": 41997, "relation_to_type": "type", "validated": true, "ani": 77.1509, "matched_fragments": 77, "total_fragments": 689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus plantarum", "strain": "strain=LMG 26214", "accession": "GCA_001730295.1", "taxid": 1077675, "species_taxid": 1077675, "relation_to_type": "type", "validated": true, "ani": 77.1326, "matched_fragments": 106, "total_fragments": 689, "ani_threshold": 95, "status": 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ureilyticus", "strain": "strain=CCUG 48799", "accession": "GCA_002806915.1", "taxid": 1131292, "species_taxid": 1131292, "relation_to_type": "type", "validated": true, "ani": 76.8526, "matched_fragments": 107, "total_fragments": 689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus saccharolyticus", "strain": "strain=DSM 20726", "accession": "GCA_001886235.1", "taxid": 41997, "species_taxid": 41997, "relation_to_type": "type", "validated": true, "ani": 76.842, "matched_fragments": 74, "total_fragments": 689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus alishanensis", "strain": "strain=ALS3", "accession": "GCA_019218635.1", "taxid": 1303817, "species_taxid": 1303817, "relation_to_type": "type", "validated": true, "ani": 76.8309, "matched_fragments": 87, "total_fragments": 689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus moraviensis", "strain": "strain=DSM 15919", 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