{ "type": "genome", "identifier": "GCF_000271425.1", "organism": "Acinetobacter venetianus RAG-1 = CIP 110063", "title": "Acinetobacter venetianus RAG-1 = CIP 110063", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Florence", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000271425.1", "bioproject": "PRJNA224116", "biosample": "SAMN02471743", "wgs_master": "AKIQ00000000.1", "refseq_category": "na", "taxid": "1191460", "species_taxid": "52133", "organism_name": "Acinetobacter venetianus RAG-1 = CIP 110063", "infraspecific_name": "strain=RAG-1", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/06/17", "asm_name": "A. venetianus RAG-1 v. 1.0", "asm_submitter": "University of Florence", "gbrs_paired_asm": "GCA_000271425.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/271/425/GCF_000271425.1_A._venetianus_RAG-1_v._1.0", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3464338", "genome_size_ungapped": "3464326", "gc_percent": "39.000000", "replicon_count": "0", "scaffold_count": "87", "contig_count": "87", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000271425.1-RS_2024_11_26", "annotation_date": "2024-11-26", "total_gene_count": "3343", "protein_coding_gene_count": "3199", "non_coding_gene_count": "105", "pubmed_id": "22887671" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-06-17", "dateModified": "2012-06-17", "datePublished": "2012-06-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter venetianus RAG-1 = CIP 110063" ], "sample_taxid": [ "1191460" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Israel: Tel Baruch" ], "sample_host_location_id": [], "data_size": "0.984 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3464338", "Number of Sequences": "87", "Longest Sequences (bp)": "205790", "N50 (bp)": "67953", "Gap Ratio (%)": "0.000346", "GCcontent (%)": "39.2", "Number of CDSs": "3171", "Average Protein Length": "309.9", "Coding Ratio (%)": "85.1", "Number of rRNAs": "22", "Number of tRNAs": "74", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter venetianus", "strain": "strain=RAG-1", "accession": "GCA_000271425.1", "taxid": 52133, "species_taxid": 52133, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1107, "total_fragments": 1113, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter venetianus", "strain": "strain=CIP 110063", "accession": "GCA_000368585.1", "taxid": 52133, "species_taxid": 52133, "relation_to_type": "type", "validated": true, "ani": 99.9869, "matched_fragments": 1100, "total_fragments": 1113, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter junii", "strain": "strain=NCTC10307", "accession": "GCA_900444875.1", "taxid": 40215, "species_taxid": 40215, "relation_to_type": "type", "validated": true, "ani": 83.7633, "matched_fragments": 757, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter junii", "strain": "strain=CIP 64.5", "accession": "GCA_000368765.1", "taxid": 40215, "species_taxid": 40215, "relation_to_type": "type", "validated": true, "ani": 83.709, "matched_fragments": 748, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter proteolyticus", "strain": "strain=NIPH 809", "accession": "GCA_000367945.1", "taxid": 1776741, "species_taxid": 1776741, "relation_to_type": "type", "validated": true, "ani": 83.4793, "matched_fragments": 772, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter vivianii", "strain": "strain=CCM 8642", "accession": "GCA_014635885.1", "taxid": 1776742, "species_taxid": 1776742, "relation_to_type": "type", "validated": true, "ani": 83.4369, "matched_fragments": 745, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gyllenbergii", "strain": "strain=MTCC 11365", "accession": "GCA_000414075.1", "taxid": 134534, "species_taxid": 134534, "relation_to_type": "type", "validated": true, "ani": 83.2698, "matched_fragments": 798, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter colistiniresistens", "strain": "strain=NIPH 2036", "accession": "GCA_000413935.1", "taxid": 280145, "species_taxid": 280145, "relation_to_type": "type", "validated": true, "ani": 83.2598, "matched_fragments": 758, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gyllenbergii", "strain": "strain=CIP 110306", "accession": "GCA_000413855.1", "taxid": 134534, "species_taxid": 134534, "relation_to_type": "type", "validated": true, "ani": 83.2551, "matched_fragments": 787, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter haemolyticus", "strain": "strain=NCTC10305", "accession": "GCA_900444835.1", "taxid": 29430, "species_taxid": 29430, "relation_to_type": "type", "validated": true, "ani": 83.0923, "matched_fragments": 728, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pittii", "strain": "strain=CIP70.29", "accession": "GCA_024390955.1", "taxid": 48296, "species_taxid": 48296, "relation_to_type": "type", "validated": true, "ani": 80.583, "matched_fragments": 478, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=PartI-Abaumannii-RM8376", "accession": "GCA_022870045.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 80.3844, "matched_fragments": 497, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=ATCC 19606", "accession": "GCA_020911985.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 80.2423, "matched_fragments": 500, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter soli", "strain": "strain=KCTC 22184", "accession": "GCA_000760595.1", "taxid": 487316, "species_taxid": 487316, "relation_to_type": "type", "validated": true, "ani": 78.8354, "matched_fragments": 335, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000368585.1", "gtdb_species": "s__Acinetobacter venetianus", "ani": 99.9869, "matched_fragments": 1100, "total_fragments": 1113, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.49", "min_intra_species_ani": "96.30", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.81", "num_clustered_genomes": 21, "status": "conclusive" }, { "accession": "GCF_000368765.1", "gtdb_species": "s__Acinetobacter junii", "ani": 83.716, "matched_fragments": 748, "total_fragments": 1113, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.03", "min_intra_species_ani": "97.21", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.81", "num_clustered_genomes": 75, "status": "-" }, { "accession": "GCF_000369525.1", "gtdb_species": "s__Acinetobacter sp000369525", "ani": 83.6151, "matched_fragments": 790, "total_fragments": 1113, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.13", "min_intra_species_ani": "96.00", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.87", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_002165255.2", "gtdb_species": "s__Acinetobacter sp002165255", "ani": 83.5889, 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772, "total_fragments": 1113, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.84", "min_intra_species_ani": "97.76", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.87", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000400715.1", "gtdb_species": "s__Acinetobacter sp000400715", "ani": 83.4431, "matched_fragments": 797, "total_fragments": 1113, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014635885.1", "gtdb_species": "s__Acinetobacter vivianii", "ani": 83.4369, "matched_fragments": 745, "total_fragments": 1113, 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Acinetobacter", "venetianus", "RAG-1", "=", "CIP", "110063" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }