{
    "type": "genome",
    "identifier": "GCF_000271485.2",
    "organism": "Pelosinus fermentans DSM 17108",
    "title": "Pelosinus fermentans DSM 17108",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "ORNL",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000271485.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN01057329",
        "wgs_master": "AKVN00000000.2",
        "refseq_category": "reference genome",
        "taxid": "1122947",
        "species_taxid": "365349",
        "organism_name": "Pelosinus fermentans DSM 17108",
        "infraspecific_name": "strain=R7",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/05/23",
        "asm_name": "Pelosinus fermentans DSM 17108_v1.1",
        "asm_submitter": "ORNL",
        "gbrs_paired_asm": "GCA_000271485.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/271/485/GCF_000271485.2_Pelosinus_fermentans_DSM_17108_v1.1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5027115",
        "genome_size_ungapped": "5027115",
        "gc_percent": "40.000000",
        "replicon_count": "0",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000271485.2-RS_2024_03_29",
        "annotation_date": "2024-03-29",
        "total_gene_count": "4706",
        "protein_coding_gene_count": "4568",
        "non_coding_gene_count": "113",
        "pubmed_id": "22933770"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-05-23",
    "dateModified": "2016-05-23",
    "datePublished": "2016-05-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pelosinus fermentans DSM 17108"
        ],
        "sample_taxid": [
            "1122947"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Washington"
        ],
        "sample_host_location_id": [],
        "data_size": "1.416 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5027115",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "5009075",
        "N50 (bp)": "5009075",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "39.8",
        "Number of CDSs": "4646",
        "Average Protein Length": "306.0",
        "Coding Ratio (%)": "84.8",
        "Number of rRNAs": "30",
        "Number of tRNAs": "78",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Pelosinus fermentans",
                "strain": "strain=R7",
                "accession": "GCA_000271485.2",
                "taxid": 365349,
                "species_taxid": 365349,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1674,
                "total_fragments": 1675,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pelosinus propionicus",
                "strain": "strain=DSM 13327",
                "accession": "GCA_900114615.1",
                "taxid": 380084,
                "species_taxid": 380084,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.6034,
                "matched_fragments": 1227,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilibacillus massiliensis",
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                "accession": "GCA_900086705.1",
                "taxid": 1806837,
                "species_taxid": 1806837,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 1675,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 4.17,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_000271485.2",
                "gtdb_species": "s__Pelosinus fermentans",
                "ani": 100.0,
                "matched_fragments": 1673,
                "total_fragments": 1675,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Propionisporales;f__Propionisporaceae;g__Pelosinus",
                "ani_circumscription_radius": 95.0,
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                "min_intra_species_ani": "99.40",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002434245.1",
                "gtdb_species": "s__Pelosinus fermentans_B",
                "ani": 94.6259,
                "matched_fragments": 1178,
                "total_fragments": 1675,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Propionisporales;f__Propionisporaceae;g__Pelosinus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000271665.2",
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                "ani": 93.4751,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Propionisporales;f__Propionisporaceae;g__Pelosinus",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Propionisporales;f__Propionisporaceae;g__Pelosinus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000725345.1",
                "gtdb_species": "s__Pelosinus sp000725345",
                "ani": 80.1958,
                "matched_fragments": 619,
                "total_fragments": 1675,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Propionisporales;f__Propionisporaceae;g__Pelosinus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017889585.1",
                "gtdb_species": "s__CTSoil-075 sp017889585",
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                "matched_fragments": 296,
                "total_fragments": 1675,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Propionisporales;f__Propionisporaceae;g__CTSoil-075",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.199,
        "cell_length": 0.497,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 31.5,
        "optimum_ph": 7.25,
        "genome_size": 5413664.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
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    "_genome_taxon": [
        "Pelosinus",
        "fermentans",
        "DSM",
        "17108"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}