{ "type": "genome", "identifier": "GCF_000273745.1", "organism": "Rickettsia australis str. Phillips", "title": "Rickettsia australis str. Phillips", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CNRS UMR 6236, Facult\u00e9 de m\u00e9decine, Universit\u00e9 de la M\u00e9diterran\u00e9e", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000273745.1", "bioproject": "PRJNA224116", "biosample": "SAMN02469769", "wgs_master": "AKVZ00000000.1", "refseq_category": "na", "taxid": "1196662", "species_taxid": "787", "organism_name": "Rickettsia australis str. Phillips", "infraspecific_name": "strain=Phillips", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/06/27", "asm_name": "Rau1.0", "asm_submitter": "CNRS UMR 6236, Facult\u00e9 de m\u00e9decine, Universit\u00e9 de la M\u00e9diterran\u00e9e", "gbrs_paired_asm": "GCA_000273745.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/273/745/GCF_000273745.1_Rau1.0", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1320572", "genome_size_ungapped": "1320572", "gc_percent": "32.500000", "replicon_count": "1", "scaffold_count": "59", "contig_count": "59", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000273745.1-RS_2025_01_08", "annotation_date": "2025-01-08", "total_gene_count": "1478", "protein_coding_gene_count": "1267", "non_coding_gene_count": "40", "pubmed_id": "22933759" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-06-27", "dateModified": "2012-06-27", "datePublished": "2012-06-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Rickettsia australis str. Phillips" ], "sample_taxid": [ "1196662" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.370 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1320572", "Number of Sequences": "59", "Longest Sequences (bp)": "91400", "N50 (bp)": "57972", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "32.3", "Number of CDSs": "1377", "Average Protein Length": "240.3", "Coding Ratio (%)": "75.2", "Number of rRNAs": "3", "Number of tRNAs": "33", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rickettsia australis", "strain": "strain=Phillips", "accession": "GCA_000273745.1", "taxid": 787, "species_taxid": 787, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 411, "total_fragments": 412, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rickettsia hoogstraalii", "strain": "strain=Croatica", "accession": "GCA_000825685.1", "taxid": 467174, "species_taxid": 467174, "relation_to_type": "type", "validated": true, "ani": 94.0449, "matched_fragments": 388, "total_fragments": 412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rickettsia asembonensis", "strain": "strain=NMRCii", "accession": "GCA_000828125.2", "taxid": 1068590, "species_taxid": 1068590, "relation_to_type": "type", "validated": true, "ani": 93.4636, "matched_fragments": 352, "total_fragments": 412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rickettsia tillamookensis", "strain": "strain=Tillamook 23", "accession": "GCA_016743795.1", "taxid": 2761623, "species_taxid": 2761623, 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"ani": 92.2331, "matched_fragments": 374, "total_fragments": 412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rickettsia rhipicephali", "strain": "strain=3-7-female6-CWPP", "accession": "GCA_000284075.1", "taxid": 33992, "species_taxid": 33992, "relation_to_type": "type", "validated": true, "ani": 92.0815, "matched_fragments": 371, "total_fragments": 412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rickettsia conorii", "strain": "strain=Malish 7", "accession": "GCA_000007025.1", "taxid": 781, "species_taxid": 781, "relation_to_type": "suspected-type", "validated": true, "ani": 92.0408, "matched_fragments": 374, "total_fragments": 412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rickettsia sibirica subsp. mongolitimonae", "strain": "strain=HA-91", "accession": "GCA_000247625.2", "taxid": 45261, "species_taxid": 35793, "relation_to_type": "suspected-type", "validated": true, "ani": 91.8715, 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Rickettsia", "australis", "str.", "Phillips" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }