{
    "type": "genome",
    "identifier": "GCF_000276905.1",
    "organism": "Liquorilactobacillus mali KCTC 3596 = DSM 20444",
    "title": "Liquorilactobacillus mali KCTC 3596 = DSM 20444",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Microbiology Dept, University College Cork",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000276905.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02471469",
        "wgs_master": "AKKT00000000.1",
        "refseq_category": "na",
        "taxid": "1046596",
        "species_taxid": "1618",
        "organism_name": "Liquorilactobacillus mali KCTC 3596 = DSM 20444",
        "infraspecific_name": "strain=DSM 20444",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2012/07/09",
        "asm_name": "LmaliDSM20444T",
        "asm_submitter": "Microbiology Dept, University College Cork",
        "gbrs_paired_asm": "GCA_000276905.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/276/905/GCF_000276905.1_LmaliDSM20444T",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2149363",
        "genome_size_ungapped": "2149363",
        "gc_percent": "36.000000",
        "replicon_count": "0",
        "scaffold_count": "196",
        "contig_count": "196",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000276905.1-RS_2024_10_11",
        "annotation_date": "2024-10-11",
        "total_gene_count": "2185",
        "protein_coding_gene_count": "2060",
        "non_coding_gene_count": "33",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2012-07-09",
    "dateModified": "2012-07-09",
    "datePublished": "2012-07-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Liquorilactobacillus mali KCTC 3596 = DSM 20444"
        ],
        "sample_taxid": [
            "1046596"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.613 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2149363",
        "Number of Sequences": "196",
        "Longest Sequences (bp)": "51309",
        "N50 (bp)": "24444",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "36.2",
        "Number of CDSs": "1978",
        "Average Protein Length": "290.2",
        "Coding Ratio (%)": "80.1",
        "Number of rRNAs": "2",
        "Number of tRNAs": "27",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Liquorilactobacillus mali",
                "strain": "strain=DSM 20444",
                "accession": "GCA_000276905.1",
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                "species_taxid": 1618,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 613,
                "total_fragments": 618,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Liquorilactobacillus mali",
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                "species_taxid": 1618,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9774,
                "matched_fragments": 596,
                "total_fragments": 618,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Liquorilactobacillus mali",
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                "species_taxid": 1618,
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                "status": "conclusive"
            },
            {
                "organism_name": "Liquorilactobacillus hordei",
                "strain": "strain=DSM 19519",
                "accession": "GCA_001434845.1",
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                "species_taxid": 468911,
                "relation_to_type": "type",
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                "total_fragments": 618,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Liquorilactobacillus hordei",
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                "accession": "GCA_019443985.1",
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                "species_taxid": 468911,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.7179,
                "matched_fragments": 414,
                "total_fragments": 618,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Liquorilactobacillus aquaticus",
                "strain": "strain=DSM 21051",
                "accession": "GCA_001436755.1",
                "taxid": 392566,
                "species_taxid": 392566,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2354,
                "matched_fragments": 82,
                "total_fragments": 618,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Liquorilactobacillus nagelii",
                "strain": "strain=DSM 13675",
                "accession": "GCA_019444005.1",
                "taxid": 82688,
                "species_taxid": 82688,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7942,
                "matched_fragments": 89,
                "total_fragments": 618,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000260415.1",
                "gtdb_species": "s__Liquorilactobacillus mali",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Liquorilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001437155.1",
                "gtdb_species": "s__Liquorilactobacillus mali_A",
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                "total_fragments": 618,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Liquorilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
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                "accession": "GCF_001434845.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.13",
                "min_intra_species_ani": "98.13",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001434935.1",
                "gtdb_species": "s__Liquorilactobacillus uvarum",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Liquorilactobacillus",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001436275.1",
                "gtdb_species": "s__Liquorilactobacillus oeni",
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                "mean_intra_species_ani": "N/A",
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            {
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                "gtdb_species": "s__Liquorilactobacillus cacaonum",
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                "accession": "GCF_001436755.1",
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            },
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001434225.1",
                "gtdb_species": "s__Liquorilactobacillus nagelii",
                "ani": 78.4292,
                "matched_fragments": 90,
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                "mean_intra_species_ani": "98.67",
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                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
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        "genome_size": null,
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        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
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        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Liquorilactobacillus",
        "mali",
        "KCTC",
        "3596",
        "=",
        "DSM",
        "20444"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}