{ "type": "genome", "identifier": "GCF_000278155.1", "organism": "Bartonella doshiae NCTC 12862 = ATCC 700133", "title": "Bartonella doshiae NCTC 12862 = ATCC 700133", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Broad Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000278155.1", "bioproject": "PRJNA224116", "biosample": "SAMN02596900", "wgs_master": "AILV00000000.1", "refseq_category": "na", "taxid": "1094553", "species_taxid": "33044", "organism_name": "Bartonella doshiae NCTC 12862 = ATCC 700133", "infraspecific_name": "strain=NCTC 12862", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/07/25", "asm_name": "Bart_dosh_NCTC_12862_R18_V1", "asm_submitter": "Broad Institute", "gbrs_paired_asm": "GCA_000278155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/278/155/GCF_000278155.1_Bart_dosh_NCTC_12862_R18_V1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1810183", "genome_size_ungapped": "1797808", "gc_percent": "38.000000", "replicon_count": "0", "scaffold_count": "7", "contig_count": "25", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000278155.1-RS_2024_04_29", "annotation_date": "2024-04-29", "total_gene_count": "1599", "protein_coding_gene_count": "1484", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-07-25", "dateModified": "2012-07-25", "datePublished": "2012-07-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Bartonella doshiae NCTC 12862 = ATCC 700133" ], "sample_taxid": [ "1094553" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.506 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1810183", "Number of Sequences": "7", "Longest Sequences (bp)": "674792", "N50 (bp)": "430161", "Gap Ratio (%)": "0.683633", "GCcontent (%)": "37.9", "Number of CDSs": "1559", "Average Protein Length": "305.1", "Coding Ratio (%)": "78.8", "Number of rRNAs": "6", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bartonella doshiae", "strain": "strain=NCTC 12862", "accession": "GCA_000278155.1", "taxid": 33044, "species_taxid": 33044, 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"organism_name": "Bartonella henselae", "strain": "strain=Houston-I", "accession": "GCA_002735245.1", "taxid": 38323, "species_taxid": 38323, "relation_to_type": "type", "validated": true, "ani": 83.1501, "matched_fragments": 487, "total_fragments": 600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella harrusi", "strain": "strain=117A", "accession": "GCA_024297065.1", "taxid": 2961895, "species_taxid": 2961895, "relation_to_type": "type", "validated": true, "ani": 82.4338, "matched_fragments": 472, "total_fragments": 600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella saheliensis", "strain": "strain=077", "accession": "GCA_902162175.1", "taxid": 1457016, "species_taxid": 1457016, "relation_to_type": "type", "validated": true, "ani": 81.8474, "matched_fragments": 405, "total_fragments": 600, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000278155.1", "gtdb_species": "s__Bartonella doshiae", "ani": 99.9964, "matched_fragments": 595, "total_fragments": 600, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.97", "min_intra_species_ani": "97.90", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.87", "num_clustered_genomes": 9, "status": "conclusive" }, { "accession": "GCF_000278295.1", "gtdb_species": "s__Bartonella taylorii", "ani": 84.8069, "matched_fragments": 495, "total_fragments": 600, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.74", "min_intra_species_ani": "97.76", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 5, 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