{ "type": "genome", "identifier": "GCF_000280785.1", "organism": "Pseudomonas agarici NCPPB 2289", "title": "Pseudomonas agarici NCPPB 2289", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Sainsbury Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000280785.1", "bioproject": "PRJNA224116", "biosample": "SAMN02471740", "wgs_master": "AKBQ00000000.1", "refseq_category": "na", "taxid": "690598", "species_taxid": "46677", "organism_name": "Pseudomonas agarici NCPPB 2289", "infraspecific_name": "strain=NCPPB 2289", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/07/30", "asm_name": "ASM28078v1", "asm_submitter": "The Sainsbury Laboratory", "gbrs_paired_asm": "GCA_000280785.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/280/785/GCF_000280785.1_ASM28078v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5511386", "genome_size_ungapped": "5449067", "gc_percent": "59.000000", "replicon_count": "0", "scaffold_count": "119", "contig_count": "699", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000280785.1-RS_2024_05_15", "annotation_date": "2024-05-15", "total_gene_count": "5251", "protein_coding_gene_count": "4907", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-07-30", "dateModified": "2012-07-30", "datePublished": "2012-07-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas agarici NCPPB 2289" ], "sample_taxid": [ "690598" ], "sample_host_organism": [ "Agaricus bisporus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand" ], "sample_host_location_id": [], "data_size": "1.551 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5511386", "Number of Sequences": "119", "Longest Sequences (bp)": "382485", "N50 (bp)": "158081", "Gap Ratio (%)": "1.130732", "GCcontent (%)": "59.1", "Number of CDSs": "4828", "Average Protein Length": "318.7", "Coding Ratio (%)": "83.7", "Number of rRNAs": "4", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas agarici", "strain": "strain=NCPPB 2289", "accession": "GCA_000280785.1", "taxid": 46677, "species_taxid": 46677, "relation_to_type": "type", "validated": true, "ani": 99.9999, 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95, "status": "below_threshold" }, { "organism_name": "Pseudomonas batumici", "strain": "strain=UCM B-321", "accession": "GCA_000820515.1", "taxid": 226910, "species_taxid": 226910, "relation_to_type": "type", "validated": true, "ani": 84.9146, "matched_fragments": 1098, "total_fragments": 1793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas chlororaphis subsp. aureofaciens", "strain": "strain=DSM 6698", "accession": "GCA_003851905.1", "taxid": 587851, "species_taxid": 587753, "relation_to_type": "type", "validated": true, "ani": 83.2131, "matched_fragments": 1052, "total_fragments": 1793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas ekonensis", "strain": "strain=COR58", "accession": "GCA_019145435.1", "taxid": 2842353, "species_taxid": 2842353, "relation_to_type": "type", "validated": true, "ani": 82.7422, "matched_fragments": 1001, "total_fragments": 1793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas kribbensis", "strain": "strain=46-2", "accession": "GCA_003352185.1", "taxid": 1628086, "species_taxid": 1628086, "relation_to_type": "type", "validated": true, "ani": 82.4169, "matched_fragments": 956, "total_fragments": 1793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas libanensis", "strain": "strain=DSM 17149", "accession": "GCA_001439685.1", "taxid": 75588, "species_taxid": 75588, "relation_to_type": "type", "validated": true, "ani": 81.9833, "matched_fragments": 936, "total_fragments": 1793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas zeae", "strain": "strain=OE 48.2", "accession": "GCA_014268485.2", "taxid": 2745510, "species_taxid": 2745510, "relation_to_type": "type", "validated": true, "ani": 81.7984, "matched_fragments": 930, "total_fragments": 1793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas germanica", "strain": 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