{ "type": "genome", "identifier": "GCF_000283015.1", "organism": "Algibacter luteus", "title": "Algibacter luteus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000283015.1", "bioproject": "PRJNA224116", "biosample": "SAMN02470927", "wgs_master": "ALIH00000000.1", "refseq_category": "na", "taxid": "1178825", "species_taxid": "1178825", "organism_name": "Algibacter luteus", "infraspecific_name": "strain=P7-3-5", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/07/30", "asm_name": "P735.v1.0", "asm_submitter": "Shandong University", "gbrs_paired_asm": "GCA_000283015.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/283/015/GCF_000283015.1_P735.v1.0", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3384849", "genome_size_ungapped": "3384849", "gc_percent": "33.500000", "replicon_count": "0", "scaffold_count": "51", "contig_count": "51", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000283015.1-RS_2024_06_10", "annotation_date": "2024-06-10", "total_gene_count": "3015", "protein_coding_gene_count": "2954", "non_coding_gene_count": "42", "pubmed_id": "23144387" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-07-30", "dateModified": "2012-07-30", "datePublished": "2012-07-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Algibacter luteus" ], "sample_taxid": [ "1178825" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.946 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3384849", "Number of Sequences": "51", "Longest Sequences (bp)": "483653", "N50 (bp)": "240041", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.3", "Number of CDSs": "2912", "Average Protein Length": "343.6", "Coding Ratio (%)": "88.7", "Number of rRNAs": "2", "Number of tRNAs": "34", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arenitalea lutea", "strain": "strain=P7-3-5", "accession": "GCA_000283015.1", "taxid": 1178825, "species_taxid": 1178825, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1106, "total_fragments": 1106, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Arenitalea lutea", "strain": "strain=CGMCC 1.12213", "accession": "GCA_900141715.1", "taxid": 1178825, "species_taxid": 1178825, "relation_to_type": "type", "validated": true, "ani": 99.9992, "matched_fragments": 1105, "total_fragments": 1106, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Algibacter marinivivus", "strain": "strain=ZY111", "accession": "GCA_003143755.1", "taxid": 2100723, "species_taxid": 2100723, "relation_to_type": "type", "validated": true, "ani": 80.4159, "matched_fragments": 659, "total_fragments": 1106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=RU-4-M-4", "accession": "GCA_007559325.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 79.7073, "matched_fragments": 603, "total_fragments": 1106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=RU-4-M-4", "accession": "GCA_008630605.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 79.6932, "matched_fragments": 603, "total_fragments": 1106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=DSM 29199", "accession": "GCA_014202225.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 79.6864, "matched_fragments": 613, "total_fragments": 1106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pectinivorans", "strain": "strain=DSM 25730", "accession": "GCA_900112595.1", "taxid": 870482, "species_taxid": 870482, "relation_to_type": "type", "validated": true, "ani": 79.6305, "matched_fragments": 570, "total_fragments": 1106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana haliotis", "strain": "strain=B1N29", "accession": "GCA_008806375.1", "taxid": 2614804, "species_taxid": 2614804, "relation_to_type": "type", "validated": true, "ani": 78.6109, "matched_fragments": 350, "total_fragments": 1106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana agarivorans", "strain": "strain=JW-26", "accession": "GCA_001642835.1", "taxid": 481183, "species_taxid": 481183, "relation_to_type": "type", "validated": true, "ani": 78.5829, "matched_fragments": 376, "total_fragments": 1106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana carrageenivorans", "strain": "strain=UJ94", "accession": "GCA_002893765.1", "taxid": 2069432, "species_taxid": 2069432, "relation_to_type": "type", "validated": true, "ani": 78.5597, "matched_fragments": 403, "total_fragments": 1106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Seonamhaeicola maritimus", "strain": "strain=1505", "accession": "GCA_008056315.1", "taxid": 2591822, "species_taxid": 2591822, "relation_to_type": "type", "validated": true, "ani": 78.449, "matched_fragments": 437, "total_fragments": 1106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga algicola", "strain": "strain=Y03", "accession": "GCA_012910715.1", "taxid": 2729136, "species_taxid": 2729136, "relation_to_type": "type", "validated": true, "ani": 78.328, "matched_fragments": 417, "total_fragments": 1106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga eckloniae", "strain": "strain=ECD14", "accession": "GCA_002886045.1", "taxid": 1803846, "species_taxid": 1803846, "relation_to_type": "type", "validated": true, "ani": 78.3039, "matched_fragments": 398, "total_fragments": 1106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pacificus", "strain": "strain=H164", "accession": "GCA_008033385.1", "taxid": 2599389, "species_taxid": 2599389, "relation_to_type": "type", "validated": true, "ani": 78.2388, "matched_fragments": 422, "total_fragments": 1106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella ulvae", "strain": "strain=HU1-3", "accession": "GCA_016827605.1", "taxid": 2799948, "species_taxid": 2799948, "relation_to_type": "type", "validated": true, "ani": 77.8754, "matched_fragments": 370, "total_fragments": 1106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera marina", "strain": "strain=NBU2968", "accession": "GCA_019880635.1", "taxid": 2873265, "species_taxid": 2873265, "relation_to_type": "type", "validated": true, "ani": 77.5726, "matched_fragments": 243, "total_fragments": 1106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontimicrobium aquaticum", "strain": "strain=CAU 1491", "accession": "GCA_005047595.1", "taxid": 2565367, "species_taxid": 2565367, "relation_to_type": "type", "validated": true, "ani": 77.4859, "matched_fragments": 249, "total_fragments": 1106, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900141715.1", "gtdb_species": "s__Arenitalea lutea", "ani": 99.9992, "matched_fragments": 1105, "total_fragments": 1106, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Arenitalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_003143755.1", "gtdb_species": "s__Algibacter_B sp003143755", "ani": 80.425, "matched_fragments": 658, "total_fragments": 1106, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Algibacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Algibacter", "luteus" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }