{ "type": "genome", "identifier": "GCF_000283235.1", "organism": "Methylocystis parvus OBBP", "title": "Methylocystis parvus OBBP", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CIB-CSIC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000283235.1", "bioproject": "PRJNA224116", "biosample": "SAMN02469457", "wgs_master": "AJTV00000000.1", "refseq_category": "na", "taxid": "1134912", "species_taxid": "134", "organism_name": "Methylocystis parvus OBBP", "infraspecific_name": "strain=OBBP", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/07/31", "asm_name": "MetPar_1.0", "asm_submitter": "CIB-CSIC", "gbrs_paired_asm": "GCA_000283235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/283/235/GCF_000283235.1_MetPar_1.0", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4475912", "genome_size_ungapped": "4475912", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "108", "contig_count": "108", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2023-04-24", "total_gene_count": "4384", "protein_coding_gene_count": "4235", "non_coding_gene_count": "54", "pubmed_id": "23012286" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-07-31", "dateModified": "2012-07-31", "datePublished": "2012-07-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylocystis parvus OBBP" ], "sample_taxid": [ "1134912" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.241 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4475912", "Number of Sequences": "108", "Longest Sequences (bp)": "183471", "N50 (bp)": "95607", "Gap Ratio (%)": "0.000067", "GCcontent (%)": "63.4", "Number of CDSs": "4296", "Average Protein Length": "296.3", "Coding Ratio (%)": "85.3", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methylocystis parvus", "strain": "strain=OBBP", "accession": "GCA_000283235.1", "taxid": 134, "species_taxid": 134, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1439, "total_fragments": 1443, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Methylocystis hirsuta", "strain": "strain=CSC1", "accession": "GCA_003722355.1", "taxid": 369798, "species_taxid": 369798, "relation_to_type": "type", "validated": true, "ani": 79.7629, "matched_fragments": 600, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylocystis silviterrae", "strain": "strain=FS", "accession": "GCA_013350005.1", "taxid": 2743612, "species_taxid": 2743612, "relation_to_type": "type", "validated": true, "ani": 79.7567, "matched_fragments": 597, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylocystis rosea", "strain": "strain=SV97", "accession": "GCA_000372845.1", "taxid": 173366, "species_taxid": 173366, "relation_to_type": "type", "validated": true, "ani": 79.6685, "matched_fragments": 592, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylosinus sporium", "strain": "strain=DSM 17706", "accession": 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"type", "validated": true, "ani": 79.1653, "matched_fragments": 533, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium aeschynomenes", "strain": "strain=83002", "accession": "GCA_013178945.1", "taxid": 2734909, "species_taxid": 2734909, "relation_to_type": "type", "validated": true, "ani": 77.0578, "matched_fragments": 262, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium marchantiae", "strain": "strain=DSM 21328", "accession": "GCA_022179405.1", "taxid": 600331, "species_taxid": 600331, "relation_to_type": "type", "validated": true, "ani": 77.0505, "matched_fragments": 205, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylorubrum aminovorans", "strain": "strain=NBRC 15686", "accession": "GCA_022179725.1", "taxid": 269069, "species_taxid": 269069, "relation_to_type": "type", "validated": true, "ani": 77.0393, "matched_fragments": 249, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium betae", "strain": "strain=CECT 5829", "accession": "GCA_024806875.1", "taxid": 244734, "species_taxid": 244734, "relation_to_type": "type", "validated": true, "ani": 76.9522, "matched_fragments": 238, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistia granuli", "strain": "strain=Ko04", "accession": "GCA_000380505.1", "taxid": 363259, "species_taxid": 363259, "relation_to_type": "type", "validated": true, "ani": 76.9502, "matched_fragments": 214, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistia adipata", "strain": "strain=DSM 17808", "accession": "GCA_000423225.1", "taxid": 166954, "species_taxid": 166954, "relation_to_type": "type", "validated": true, "ani": 76.7738, "matched_fragments": 268, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium isbiliense", "strain": "strain=DSM 17168", "accession": "GCA_022179325.1", "taxid": 315478, "species_taxid": 315478, "relation_to_type": "type", "validated": true, "ani": 76.7323, "matched_fragments": 254, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000283235.1", "gtdb_species": "s__Methylocystis parvus", "ani": 100.0, "matched_fragments": 1439, "total_fragments": 1443, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylocystis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_016745395.1", 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