{ "type": "genome", "identifier": "GCF_000283335.1", "organism": "Halogranum salarium B-1", "title": "Halogranum salarium B-1", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Research Institute of Bioscience and Biotechnology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000283335.1", "bioproject": "PRJNA224116", "biosample": "SAMN02470186", "wgs_master": "ALJD00000000.1", "refseq_category": "na", "taxid": "1210908", "species_taxid": "553466", "organism_name": "Halogranum salarium B-1", "infraspecific_name": "strain=B-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/08/03", "asm_name": "162.HSB1.1", "asm_submitter": "Korea Research Institute of Bioscience and Biotechnology", "gbrs_paired_asm": "GCA_000283335.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/283/335/GCF_000283335.1_162.HSB1.1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from synonym type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "archaea", "genome_size": "4492306", "genome_size_ungapped": "4492306", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "17", "contig_count": "17", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000283335.1-RS_2024_10_11", "annotation_date": "2024-10-11", "total_gene_count": "4562", "protein_coding_gene_count": "4434", "non_coding_gene_count": "72", "pubmed_id": "23144405" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-08-03", "dateModified": "2012-08-03", "datePublished": "2012-08-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Halogranum salarium B-1" ], "sample_taxid": [ "1210908" ], "sample_host_organism": [], 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"min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009674605.1", "gtdb_species": "s__Haloferax sp009674605", "ani": 79.013, "matched_fragments": 529, "total_fragments": 1488, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloferax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000337095.1", "gtdb_species": "s__Halogeometricum pallidum", "ani": 78.9146, "matched_fragments": 609, "total_fragments": 1488, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halogeometricum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.096, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": 7.5, "genome_size": 4492306.0, "gc_content": 62.201, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 1.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Halogranum", "salarium", "B-1" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }