{ "type": "genome", "identifier": "GCF_000284295.1", "organism": "Actinoplanes missouriensis 431", "title": "Actinoplanes missouriensis 431", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000284295.1", "bioproject": "PRJNA224116", "biosample": "SAMD00060941", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "512565", "species_taxid": "1866", "organism_name": "Actinoplanes missouriensis 431", "infraspecific_name": "strain=431", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/03/28", "asm_name": "ASM28429v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_000284295.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/284/295/GCF_000284295.1_ASM28429v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8773466", "genome_size_ungapped": "8773466", "gc_percent": "71.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000284295.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "8187", "protein_coding_gene_count": "8029", "non_coding_gene_count": "80", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-03-28", "dateModified": "2012-03-28", "datePublished": "2012-03-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinoplanes missouriensis 431" ], "sample_taxid": [ "512565" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "2.348 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8773466", "Number of Sequences": "1", "Longest Sequences (bp)": "8773466", "N50 (bp)": "8773466", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.8", "Number of CDSs": "8216", "Average Protein Length": "323.5", "Coding Ratio (%)": "90.9", "Number of rRNAs": "18", "Number of tRNAs": "76", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinoplanes missouriensis", "strain": "strain=431", "accession": "GCA_000284295.1", "taxid": 1866, "species_taxid": 1866, "relation_to_type": "type", 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"below_threshold" }, { "organism_name": "Actinoplanes xinjiangensis", "strain": "strain=DSM 45184", "accession": "GCA_003148685.1", "taxid": 512350, "species_taxid": 512350, "relation_to_type": "type", "validated": true, "ani": 82.9747, "matched_fragments": 1877, "total_fragments": 2924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes ianthinogenes", "strain": "strain=NBRC 13996", "accession": "GCA_018324205.1", "taxid": 122358, "species_taxid": 122358, "relation_to_type": "type", "validated": true, "ani": 82.9395, "matched_fragments": 1788, "total_fragments": 2924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes italicus", "strain": "strain=DSM 43146", "accession": "GCA_003001815.1", "taxid": 113567, "species_taxid": 113567, "relation_to_type": "type", "validated": true, "ani": 82.9328, "matched_fragments": 1896, "total_fragments": 2924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.0, "cell_length": 0.194, "doubling_h": null, "growth_tmp": 27.0, "optimum_tmp": 28.0, "optimum_ph": 7.5, "genome_size": 8773467.0, "gc_content": 70.8, "coding_genes": 7931.0, "rRNA16S_genes": 6.0, "tRNA_genes": 58.0, "gram_stain": 1.0, "sporulation": 1.0, "motility": 0.857, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.666, "coccobacillus_cell_shape": 0.333, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Actinoplanes", "missouriensis", "431" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }