{ "type": "genome", "identifier": "GCF_000284375.1", "organism": "Bradyrhizobium japonicum USDA 6", "title": "Bradyrhizobium japonicum USDA 6", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyoto Sangyo University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000284375.1", "bioproject": "PRJNA224116", "biosample": "SAMD00060992", "wgs_master": "na", "refseq_category": "na", "taxid": "1037409", "species_taxid": "375", "organism_name": "Bradyrhizobium japonicum USDA 6", "infraspecific_name": "strain=USDA 6", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/10/31", "asm_name": "ASM28437v1", "asm_submitter": "Kyoto Sangyo University", "gbrs_paired_asm": "GCA_000284375.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/284/375/GCF_000284375.1_ASM28437v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9207384", "genome_size_ungapped": "9207384", "gc_percent": "63.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000284375.1-RS_2024_05_26", "annotation_date": "2024-05-26", "total_gene_count": "8760", "protein_coding_gene_count": "8421", "non_coding_gene_count": "66", "pubmed_id": "24710291" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-10-31", "dateModified": "2011-10-31", "datePublished": "2011-10-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Bradyrhizobium japonicum USDA 6" ], "sample_taxid": [ "1037409" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], 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"conclusive" }, { "organism_name": "Bradyrhizobium japonicum", "strain": "strain=USDA 6", "accession": "GCA_000472985.1", "taxid": 375, "species_taxid": 375, "relation_to_type": "type", "validated": true, "ani": 99.9662, "matched_fragments": 2985, "total_fragments": 3069, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bradyrhizobium japonicum", "strain": "strain=NBRC 14783", "accession": "GCA_006539645.1", "taxid": 375, "species_taxid": 375, "relation_to_type": "type", "validated": true, "ani": 99.9556, "matched_fragments": 2938, "total_fragments": 3069, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bradyrhizobium diazoefficiens", "strain": "strain=USDA 110", "accession": "GCA_001642675.1", "taxid": 1355477, "species_taxid": 1355477, "relation_to_type": "type", "validated": true, "ani": 90.9031, "matched_fragments": 2351, "total_fragments": 3069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium 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