{
    "type": "genome",
    "identifier": "GCF_000285555.1",
    "organism": "Kurthia massiliensis",
    "title": "Kurthia massiliensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "laboratoire URMITE CNRS 6236",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000285555.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA2272071",
        "wgs_master": "CAEU00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1033739",
        "species_taxid": "1033739",
        "organism_name": "Kurthia massiliensis",
        "infraspecific_name": "strain=JC30",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2012/07/19",
        "asm_name": "ASM28555v1",
        "asm_submitter": "laboratoire URMITE CNRS 6236",
        "gbrs_paired_asm": "GCA_000285555.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/285/555/GCF_000285555.1_ASM28555v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3230817",
        "genome_size_ungapped": "3201696",
        "gc_percent": "39.500000",
        "replicon_count": "0",
        "scaffold_count": "63",
        "contig_count": "116",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000285555.1-RS_2024_08_06",
        "annotation_date": "2024-08-06",
        "total_gene_count": "3324",
        "protein_coding_gene_count": "3164",
        "non_coding_gene_count": "100",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2012-07-19",
    "dateModified": "2012-07-19",
    "datePublished": "2012-07-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Kurthia massiliensis"
        ],
        "sample_taxid": [
            "1033739"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Senegal"
        ],
        "sample_host_location_id": [],
        "data_size": "0.903 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3228323",
        "Number of Sequences": "47",
        "Longest Sequences (bp)": "813723",
        "N50 (bp)": "358739",
        "Gap Ratio (%)": "0.902078",
        "GCcontent (%)": "39.3",
        "Number of CDSs": "3223",
        "Average Protein Length": "286.2",
        "Coding Ratio (%)": "85.7",
        "Number of rRNAs": "5",
        "Number of tRNAs": "81",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Kurthia massiliensis",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
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            },
            {
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                "species_taxid": 1421019,
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                "validated": true,
                "ani": 82.1312,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "status": "below_threshold"
            },
            {
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kurthia zopfii",
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                "species_taxid": 1650,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rummeliibacillus stabekisii",
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                "accession": "GCA_014202625.1",
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                "species_taxid": 241244,
                "relation_to_type": "type",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Rummeliibacillus stabekisii",
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                "accession": "GCA_007988965.1",
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                "species_taxid": 241244,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3492,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kurthia sibirica",
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                "accession": "GCA_003143975.1",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Viridibacillus soli",
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                "accession": "GCA_016612995.1",
                "taxid": 2798301,
                "species_taxid": 2798301,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0237,
                "matched_fragments": 195,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Viridibacillus arvi",
                "strain": "strain=DSM 16317",
                "accession": "GCA_001274945.1",
                "taxid": 263475,
                "species_taxid": 263475,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7254,
                "matched_fragments": 188,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Solibacillus merdavium",
                "strain": "strain=Sa1YVA6",
                "accession": "GCA_014836935.1",
                "taxid": 2762218,
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus contaminans",
                "strain": "strain=DSM 25560",
                "accession": "GCA_001278945.1",
                "taxid": 1293441,
                "species_taxid": 1293441,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0747,
                "matched_fragments": 146,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_000285555.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Kurthia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
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            {
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                "num_clustered_genomes": 8,
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            },
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                "mean_intra_species_ani": "N/A",
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            },
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            },
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}