{ "type": "genome", "identifier": "GCF_000292245.2", "organism": "Alkalihalobacillus alcalophilus ATCC 27647 = CGMCC 1.3604", "title": "Alkalihalobacillus alcalophilus ATCC 27647 = CGMCC 1.3604", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Mount Sinai School of Medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000292245.2", "bioproject": "PRJNA224116", "biosample": "SAMN02470564", "wgs_master": "ALPT00000000.2", "refseq_category": "na", "taxid": "1218173", "species_taxid": "1445", "organism_name": "Alkalihalobacillus alcalophilus ATCC 27647 = CGMCC 1.3604", "infraspecific_name": "strain=AV1934", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/09/17", "asm_name": "ASM29224v2", "asm_submitter": "Mount Sinai School of Medicine", "gbrs_paired_asm": "GCA_000292245.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/292/245/GCF_000292245.2_ASM29224v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4370295", "genome_size_ungapped": "4370295", "gc_percent": "37.500000", "replicon_count": "0", "scaffold_count": "182", "contig_count": "182", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-25", "total_gene_count": "4324", "protein_coding_gene_count": "4113", "non_coding_gene_count": "93", "pubmed_id": "25395643" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-09-17", "dateModified": "2014-09-17", "datePublished": "2014-09-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Alkalihalobacillus alcalophilus ATCC 27647 = CGMCC 1.3604" ], "sample_taxid": [ "1218173" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.240 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4370295", "Number of Sequences": "182", "Longest Sequences (bp)": "134220", "N50 (bp)": "50909", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.4", "Number of CDSs": "4264", "Average Protein Length": "275.9", "Coding Ratio (%)": "80.7", "Number of rRNAs": "6", "Number of tRNAs": "79", "Number of CRISPRs": "10" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alkalihalobacillus alcalophilus", "strain": "strain=AV1934", "accession": 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