# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_63	LOCUS_00620	sequence1:71439..71705(+)	frameshift		71690,71732	WP_011921639.1	sigma-70 family RNA polymerase sigma factor	79.5	46.8	71.2
MGA_94	LOCUS_00920	sequence1:94771..95046(-)	partial			WP_001007697.1	site-specific integrase	85.7	20.7	87.2
MGA_108	LOCUS_01060	sequence1:112810..113202(-)	frameshift		113141	WP_011837700.1	LD-carboxypeptidase	83.8	34.4	67.0
MGA_109	LOCUS_01070	sequence1:113136..113753(-)	frameshift		113141	WP_011837700.1	LD-carboxypeptidase	100.0	64.7	74.6
MGA_116	LOCUS_01140	sequence1:117073..117483(+)	partial			WP_000265622.1	competence type IV pilus minor pilin ComGG	94.1	72.3	32.8
MGA_153	LOCUS_01510	sequence1:156430..161433(+)	partial			WP_011254514.1	DUF1542 domain-containing protein	60.7	39.1	25.9
MGA_166	LOCUS_01640	sequence1:176174..176422(-)	frameshift		176438	WP_002941492.1	YbaB/EbfC family nucleoid-associated protein	100.0	82.8	100.0
MGA_171	LOCUS_01690	sequence1:183538..184341(+)	frameshift		183472	WP_011836440.1	serine hydrolase domain-containing protein	97.4	83.6	66.5
MGA_187	LOCUS_01850	sequence1:204904..205083(+)	frameshift		205065	WP_012775225.1	heavy metal translocating P-type ATPase	94.9	6.8	58.9
MGA_188	LOCUS_01860	sequence1:205223..205975(+)	frameshift,internal_stop_codon	206030..206032(+)	205792,205065,205077,205071	WP_012775225.1	heavy metal translocating P-type ATPase	74.0	22.4	67.7
MGA_189	LOCUS_01870	sequence1:206032..206994(+)	frameshift,internal_stop_codon	206030..206032(+)	205792	WP_012775225.1	heavy metal translocating P-type ATPase	81.2	31.4	90.4
MGA_194	LOCUS_01920	sequence1:212709..213869(+)	partial			WP_164925485.1	LysM domain-containing protein	43.8	52.0	94.7
MGA_196	LOCUS_01940	sequence1:215989..216147(-)	partial			WP_011921815.1	PTS system trehalose-specific EIIBC component	100.0	7.8	98.1
MGA_197	LOCUS_01950	sequence1:216197..216547(+)	frameshift		216502	WP_074390220.1	IS630 family transposase	91.4	37.6	96.2
MGA_209	LOCUS_02070	sequence1:230465..231829(+)	frameshift		231772	WP_012774934.1	DUF1430 domain-containing protein	96.7	66.4	99.5
MGA_210	LOCUS_02080	sequence1:231817..232368(+)	frameshift		231769	WP_012774934.1	DUF1430 domain-containing protein	100.0	27.7	96.2
MGA_234	LOCUS_02320	sequence1:257737..258456(+)	internal_stop_codon	258454..258456(+)		WP_012775427.1	LPXTG cell wall anchor domain-containing protein	100.0	31.5	35.3
MGA_235	LOCUS_02330	sequence1:258586..259776(+)	internal_stop_codon	258454..258456(+)		WP_012775427.1	LPXTG cell wall anchor domain-containing protein	85.4	40.7	29.3
MGA_294	LOCUS_02910	sequence1:332421..333266(+)	frameshift		333254	WP_002901047.1	Cof-type HAD-IIB family hydrolase	99.3	59.7	50.2
MGA_295	LOCUS_02920	sequence1:333268..333786(+)	frameshift		333254	WP_002901047.1	Cof-type HAD-IIB family hydrolase	97.7	36.0	65.5
MGA_317	LOCUS_03140	sequence1:353966..354250(+)	partial			WP_000571271.1	GNAT family N-acetyltransferase	93.6	58.4	47.8
MGA_318	LOCUS_03150	sequence1:354403..354756(+)	internal_stop_codon	354334..354336(+)		WP_000844694.1	cysteine hydrolase family protein	92.3	65.1	41.7
MGA_356	LOCUS_03530	sequence1:400906..401220(+)	partial			WP_004194153.1	DNA-directed RNA polymerase subunit omega	62.5	62.5	100.0
MGA_400	LOCUS_03960	sequence1:454285..454680(+)	partial			WP_012774995.1	signal peptidase I	100.0	66.8	100.0
MGA_402	LOCUS_03980	sequence1:454877..459688(+)	partial			WP_015942796.1	InlB B-repeat-containing protein	13.0	15.0	26.0
MGA_405	LOCUS_04010	sequence1:462331..462666(-)	partial			WP_116878224.1	IS982 family transposase	86.5	27.7	59.4
MGA_418	LOCUS_04140	sequence1:475988..476287(-)	partial			WP_012775506.1	ATP-dependent Clp protease ATP-binding subunit	99.0	13.2	100.0
MGA_426	LOCUS_04220	sequence1:482001..482378(-)	partial			WP_224783972.1	IS5 family transposase	85.6	40.0	47.7
MGA_502	LOCUS_04980	sequence1:568605..569111(+)	partial			WP_164736349.1	IS5 family transposase	83.3	39.4	40.4
MGA_504	LOCUS_05000	sequence1:569728..570078(+)	frameshift		570033	WP_074390220.1	IS630 family transposase	91.4	37.6	97.2
MGA_508	LOCUS_05040	sequence1:571342..572298(+)	frameshift		572184,572227,572270	WP_068990772.1	IS66-like element short variant transposase	89.6	64.2	82.4
MGA_509	LOCUS_05050	sequence1:572282..572674(+)	frameshift		572184,572227,572270	WP_068990772.1	IS66-like element short variant transposase	100.0	28.9	80.0
MGA_510	LOCUS_05060	sequence1:573088..573699(+)	partial			WP_001155321.1	IS30-like element ISSpn8 family transposase	100.0	64.0	90.1
MGA_511	LOCUS_05070	sequence1:574059..574328(-)	frameshift		574348	WP_012775527.1	tyrosine-type recombinase/integrase	86.5	26.1	66.2
MGA_525	LOCUS_05210	sequence1:587114..587464(+)	frameshift		587419	WP_074390220.1	IS630 family transposase	91.4	37.6	98.1
MGA_587	LOCUS_05830	sequence1:652817..653200(+)	partial			WP_012775635.1	DUF975 family protein	100.0	45.7	99.2
MGA_591	LOCUS_05870	sequence1:656125..656520(+)	frameshift		656508	WP_032555499.1	site-specific DNA-methyltransferase	94.7	18.2	50.0
MGA_592	LOCUS_05880	sequence1:656942..657784(+)	partial			WP_197693007.1	site-specific DNA-methyltransferase	100.0	42.6	43.3
MGA_594	LOCUS_05900	sequence1:661281..661496(+)	frameshift,internal_stop_codon	661495..661497(+)	661155,661548	WP_029172398.1	IS200/IS605-like element ISSsu4 family transposase	100.0	46.1	100.0
MGA_603	LOCUS_05990	sequence1:672991..673956(+)	frameshift		673755	WP_003688773.1	class I SAM-dependent DNA methyltransferase	77.9	44.7	46.6
MGA_604	LOCUS_06000	sequence1:673910..674632(+)	frameshift		673755	WP_003688773.1	class I SAM-dependent DNA methyltransferase	99.2	44.5	71.4
MGA_610	LOCUS_06060	sequence1:679076..679387(+)	internal_stop_codon	679385..679387(+)		WP_011836983.1	DNA alkylation repair protein	100.0	47.7	60.2
MGA_611	LOCUS_06070	sequence1:679463..679729(+)	internal_stop_codon	679385..679387(+)		WP_002263399.1	DNA alkylation repair protein	100.0	38.6	71.6
MGA_631	LOCUS_06270	sequence1:702113..702505(+)	internal_stop_codon	701996..701998(+)		WP_010714116.1	hypothetical protein	90.0	60.0	36.4
MGA_656	LOCUS_06520	sequence1:728058..728222(+)	partial			WP_012775058.1	hypothetical protein	53.7	53.7	100.0
MGA_657	LOCUS_06530	sequence1:728586..732356(+)	partial			WP_000514298.1	YSIRK-type signal peptide-containing protein	37.1	27.6	29.1
MGA_663	LOCUS_06590	sequence1:743438..743662(+)	frameshift		743650	WP_000599739.1	Fic family protein	95.9	35.3	62.0
MGA_664	LOCUS_06600	sequence1:743637..744044(+)	frameshift		743650	WP_002263264.1	Fic family protein	95.6	64.7	55.4
MGA_705	LOCUS_07010	sequence1:784676..784957(-)	partial			WP_011921673.1	IS110 family transposase	82.8	19.9	97.4
MGA_710	LOCUS_07060	sequence1:793363..794253(+)	frameshift		794232	WP_000285045.1	MATE family efflux transporter	98.0	65.0	59.0
MGA_711	LOCUS_07070	sequence1:794298..794711(+)	frameshift		794232	WP_000285045.1	MATE family efflux transporter	92.0	28.3	57.1
MGA_749	LOCUS_07450	sequence1:827077..827739(-)	internal_stop_codon	827773..827775(-)		WP_012775624.1	lipoprotein	100.0	83.5	95.9
MGA_758	LOCUS_07540	sequence1:837161..837598(+)	partial			WP_003246258.1	tunicamycin resistance ATP-binding TmrB	100.0	73.6	40.0
MGA_760	LOCUS_07560	sequence1:838513..839214(+)	frameshift		838469	WP_002359995.1	Abi family protein	93.1	68.0	42.7
MGA_822	LOCUS_08180	sequence1:906835..907071(+)	partial			WP_171988357.1	hypothetical protein	98.7	71.3	84.4
MGA_830	LOCUS_08260	sequence1:914964..915737(-)	frameshift		915804	WP_012775547.1	tagatose-6-phosphate kinase	100.0	82.9	63.8
MGA_831	LOCUS_08270	sequence1:915745..915897(-)	frameshift		915801	WP_002468897.1	tagatose-6-phosphate kinase	78.0	12.6	66.7
MGA_838	LOCUS_08340	sequence1:919245..920036(+)	internal_stop_codon	920034..920036(+)		WP_011254116.1	site-specific integrase	100.0	76.3	50.9
MGA_839	LOCUS_08350	sequence1:920082..920291(+)	internal_stop_codon	920034..920036(+)		WP_011254116.1	site-specific integrase	97.1	19.1	76.1
MGA_893	LOCUS_08890	sequence1:968845..968997(-)	partial			WP_002289298.1	DUF438 domain-containing protein	100.0	11.0	78.0
MGA_896	LOCUS_08920	sequence1:970324..970479(-)	partial			WP_002365476.1	GNAT family N-acetyltransferase	100.0	30.4	52.9
MGA_897	LOCUS_08930	sequence1:970587..970937(+)	frameshift		970892	WP_074390220.1	IS630 family transposase	91.4	37.6	97.2
MGA_898	LOCUS_08940	sequence1:971435..971716(-)	partial			WP_002365476.1	GNAT family N-acetyltransferase	96.8	53.0	53.3
MGA_979	LOCUS_09750	sequence1:1055674..1056324(-)	internal_stop_codon	1056370..1056372(-)		WP_061630291.1	LPXTG-anchored hyaluronate lyase	97.2	15.9	30.2
MGA_980	LOCUS_09760	sequence1:1056370..1059192(-)	internal_stop_codon	1056370..1056372(-)		WP_061630291.1	LPXTG-anchored hyaluronate lyase	88.5	77.5	41.1
MGA_1038	LOCUS_10340	sequence1:1112324..1112896(-)	frameshift		1113008	WP_012027229.1	glycosyltransferase family 4 protein	100.0	45.6	99.5
MGA_1039	LOCUS_10350	sequence1:1112985..1113578(-)	frameshift		1113008	WP_012027229.1	glycosyltransferase family 4 protein	98.0	46.3	99.5
MGA_1051	LOCUS_10470	sequence1:1128904..1129290(-)	frameshift,internal_stop_codon	1129410..1129412(-)	1129397	WP_120171861.1	GBS Bsp-like repeat-containing protein	100.0	11.8	82.8
MGA_1052	LOCUS_10480	sequence1:1129410..1131881(-)	frameshift		1129418	WP_120171861.1	GBS Bsp-like repeat-containing protein	75.0	57.9	60.4
MGA_1065	LOCUS_10610	sequence1:1142345..1142887(-)	partial			WP_012027255.1	DUF3114 domain-containing protein	100.0	60.4	99.4
MGA_1105	LOCUS_11010	sequence1:1185981..1186436(-)	partial			WP_012775213.1	TIGR02206 family membrane protein	100.0	65.1	100.0
MGA_1122	LOCUS_11180	sequence1:1203395..1203643(-)	frameshift		1203445	WP_012027310.1	hypothetical protein	84.1	55.6	92.8
MGA_1138	LOCUS_11340	sequence1:1224301..1226103(-)	frameshift		1226149	WP_012775225.1	heavy metal translocating P-type ATPase	100.0	72.4	99.2
MGA_1139	LOCUS_11350	sequence1:1226129..1226791(-)	frameshift		1226143	WP_012775225.1	heavy metal translocating P-type ATPase	99.1	26.3	96.8
MGA_1156	LOCUS_11520	sequence1:1245824..1246366(-)	frameshift		1245826	WP_012027345.1	HAD family hydrolase	100.0	76.3	100.0
MGA_1173	LOCUS_11680	sequence1:1265077..1265286(-)	frameshift		1265345,1265329	WP_033682231.1	IS200/IS605 family transposase	92.8	41.6	82.8
MGA_1174	LOCUS_11690	sequence1:1265657..1266025(+)	internal_stop_codon	1266023..1266025(+)		WP_010921895.1	ISAs1-like element IS1548 family transposase	100.0	32.6	69.9
MGA_1175	LOCUS_11700	sequence1:1266041..1266421(+)	internal_stop_codon	1266023..1266025(+),1266419..1266421(+)		WP_000564846.1	ISAs1-like element IS1548 family transposase	99.2	33.2	67.2
MGA_1176	LOCUS_11710	sequence1:1266422..1266628(+)	internal_stop_codon	1266419..1266421(+)		WP_010922786.1	ISAs1-like element IS1548 family transposase	100.0	18.0	77.9
MGA_1182	LOCUS_11770	sequence1:1272211..1272462(-)	partial			WP_000048054.1	30S ribosomal protein S21	51.8	74.1	100.0
MGA_1293	LOCUS_12880	sequence1:1384778..1385371(-)	partial			WP_003723551.1	YitT family protein	90.4	63.1	38.2
MGA_1322	LOCUS_13170	sequence1:1410317..1410730(-)	partial			WP_004194811.1	DUF948 domain-containing protein	67.9	67.9	100.0
MGA_1327	LOCUS_13220	sequence1:1413863..1414213(+)	frameshift		1414168	WP_074390220.1	IS630 family transposase	91.4	37.6	97.2
MGA_1330	LOCUS_13250	sequence1:1416064..1417062(-)	partial			WP_000429384.1	Tex family protein	94.6	43.8	78.1
MGA_1350	LOCUS_13450	sequence1:1432788..1433468(+)	internal_stop_codon	1433466..1433468(+)		WP_000915911.1	Gfo/Idh/MocA family oxidoreductase	100.0	69.5	58.4
MGA_1355	LOCUS_13500	sequence1:1437321..1437536(-)	frameshift,internal_stop_codon	1437320..1437322(-)	1437268,1437661	WP_029172398.1	IS200/IS605-like element ISSsu4 family transposase	100.0	46.1	100.0
MGA_1382	LOCUS_13770	sequence1:1465845..1466132(-)	frameshift		1465904	WP_012027584.1	YSIRK-type signal peptide-containing protein	77.9	10.2	86.5
MGA_1436	LOCUS_14310	sequence1:1517570..1518094(-)	frameshift		1518120	WP_000140846.1	NADPH-dependent oxidoreductase	100.0	73.4	63.8
MGA_1492	LOCUS_14870	sequence1:1577210..1577602(-)	partial			WP_001168903.1	CPBP family intramembrane metalloprotease SdpA	81.5	50.2	34.9
MGA_1555	LOCUS_15500	sequence1:1644842..1645570(+)	frameshift		1645558	WP_164925488.1	IS110 family transposase	100.0	56.3	95.5
MGA_1556	LOCUS_15510	sequence1:1645554..1646033(+)	frameshift		1645567	WP_164925488.1	IS110 family transposase	98.7	36.5	98.1
MGA_1602	LOCUS_15970	sequence1:1690414..1690998(-)	frameshift		1691117	WP_162038636.1	IS110 family transposase	100.0	45.1	99.5
MGA_1603	LOCUS_15980	sequence1:1691100..1691615(-)	frameshift		1691117	WP_162038636.1	IS110 family transposase	96.5	38.4	100.0
MGA_1620	LOCUS_16150	sequence1:1716297..1717115(-)	frameshift		1716338	WP_000580599.1	MupG family TIM beta-alpha barrel fold protein	84.6	67.5	37.7
MGA_1678	LOCUS_16730	sequence1:1783897..1784337(-)	frameshift		1784351	WP_012775359.1	3'-5' exoribonuclease YhaM family protein	100.0	46.6	99.3
MGA_1679	LOCUS_16740	sequence1:1784259..1784846(-)	frameshift		1784342	WP_012775359.1	3'-5' exoribonuclease YhaM family protein	86.2	53.7	100.0
MGA_1769	LOCUS_17640	sequence1:1877812..1878330(-)	frameshift		1877838	WP_002262114.1	response regulator transcription factor	94.8	65.6	53.0
MGA_1779	LOCUS_17740	sequence1:1888623..1888775(-)	internal_stop_codon	1888791..1888793(-)		WP_000822370.1	pilin N-terminal domain-containing protein	86.0	6.1	67.4
MGA_1781	LOCUS_17760	sequence1:1890619..1894713(-)	partial			WP_164691239.1	SpaA isopeptide-forming pilin-related protein	76.8	27.9	24.2
MGA_1847	LOCUS_18420	sequence1:1966611..1966826(+)	frameshift		1966754	WP_012028049.1	S4 domain-containing protein YaaA	70.4	39.4	100.0
MGA_1848	LOCUS_18430	sequence1:1966738..1966995(+)	frameshift		1966754	WP_012028049.1	S4 domain-containing protein YaaA	92.9	62.2	86.1
MGA_1854	LOCUS_18490	sequence1:1975049..1976902(+)	partial			WP_012028056.1	YfhO family protein	100.0	71.8	100.0