{ "type": "genome", "identifier": "GCF_000294495.1", "organism": "Streptococcus suis S735", "title": "Streptococcus suis S735", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universite Laval", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000294495.1", "bioproject": "PRJNA224116", "biosample": "SAMN02604110", "wgs_master": "na", "refseq_category": "na", "taxid": "1184252", "species_taxid": "1307", "organism_name": "Streptococcus suis S735", "infraspecific_name": "strain=S735", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/09/04", "asm_name": "ASM29449v1", "asm_submitter": "Universite Laval", "gbrs_paired_asm": "GCA_000294495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/294/495/GCF_000294495.1_ASM29449v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1980887", "genome_size_ungapped": "1980887", "gc_percent": "41.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000294495.1-RS_2024_03_20", "annotation_date": "2024-03-20", "total_gene_count": "1918", "protein_coding_gene_count": "1789", "non_coding_gene_count": "72", "pubmed_id": "23105076" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-09-04", "dateModified": "2012-09-04", "datePublished": "2012-09-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus suis S735" ], "sample_taxid": [ "1184252" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.561 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1980887", "Number of Sequences": "1", "Longest Sequences (bp)": "1980887", "N50 (bp)": "1980887", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.4", "Number of CDSs": "1853", "Average Protein Length": "311.2", "Coding Ratio (%)": "87.3", "Number of rRNAs": "12", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus suis", "strain": "strain=S735", "accession": "GCA_000294495.1", "taxid": 1307, "species_taxid": 1307, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 658, "total_fragments": 660, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus suis", "strain": "strain=NCTC10234", "accession": "GCA_900475585.1", "taxid": 1307, "species_taxid": 1307, "relation_to_type": "type", "validated": true, "ani": 99.998, "matched_fragments": 657, "total_fragments": 660, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus parasuis", "strain": "strain=SUT-286", "accession": "GCA_021654455.1", "taxid": 1501662, "species_taxid": 1501662, "relation_to_type": "suspected-type", "validated": true, "ani": 87.2418, "matched_fragments": 451, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus plurextorum", "strain": "strain=DSM 22810", "accession": "GCA_000423745.1", "taxid": 456876, "species_taxid": 456876, "relation_to_type": "type", "validated": true, "ani": 83.0845, "matched_fragments": 171, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus porci", "strain": "strain=DSM 23759", "accession": "GCA_000423765.1", "taxid": 502567, "species_taxid": 502567, "relation_to_type": "type", "validated": true, "ani": 82.4583, "matched_fragments": 142, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus oriscaviae", "strain": "strain=HKU75", "accession": "GCA_018137985.1", "taxid": 2781599, "species_taxid": 2781599, "relation_to_type": "type", "validated": true, "ani": 80.9851, "matched_fragments": 270, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ruminantium", "strain": "strain=GUT187T", "accession": "GCA_003609975.1", "taxid": 1917441, "species_taxid": 1917441, "relation_to_type": "type", "validated": true, "ani": 80.8512, "matched_fragments": 362, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus constellatus subsp. constellatus", "strain": "strain=CCUG 24889", "accession": "GCA_023167545.1", "taxid": 184246, "species_taxid": 76860, "relation_to_type": "type", "validated": true, "ani": 78.9245, "matched_fragments": 98, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vulneris", "strain": "strain=DM3B3", "accession": "GCA_019218685.1", "taxid": 2853160, "species_taxid": 2853160, "relation_to_type": "type", "validated": true, "ani": 78.8544, "matched_fragments": 127, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ovis", "strain": "strain=DSM 16829", "accession": "GCA_000380125.1", "taxid": 82806, "species_taxid": 82806, "relation_to_type": "type", "validated": true, "ani": 78.7477, "matched_fragments": 172, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus cuniculi", "strain": "strain=CCUG 65085", "accession": "GCA_001921845.1", "taxid": 1432788, "species_taxid": 1432788, "relation_to_type": "type", "validated": true, "ani": 78.5311, "matched_fragments": 185, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000294495.1", "gtdb_species": "s__Streptococcus suis", "ani": 100.0, "matched_fragments": 659, "total_fragments": 660, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.2533, "mean_intra_species_ani": "98.55", "min_intra_species_ani": "95.80", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.80", "num_clustered_genomes": 1267, "status": "inconclusive" }, { "accession": "GCF_902702775.1", "gtdb_species": "s__Streptococcus suis_W", "ani": 95.2627, "matched_fragments": 552, "total_fragments": 660, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.2533, "mean_intra_species_ani": "96.52", "min_intra_species_ani": "95.78", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.77", "num_clustered_genomes": 106, "status": "inconclusive" }, { "accession": "GCA_002831545.1", "gtdb_species": "s__Streptococcus suis_P", "ani": 94.6885, "matched_fragments": 551, "total_fragments": 660, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.02", "min_intra_species_ani": "95.04", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.78", "num_clustered_genomes": 133, "status": "-" }, { "accession": "GCA_000440235.1", "gtdb_species": "s__Streptococcus suis_F", "ani": 94.5536, "matched_fragments": 528, "total_fragments": 660, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.62", "min_intra_species_ani": "95.22", "mean_intra_species_af": "0.78", "min_intra_species_af": "0.75", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_002760245.1", "gtdb_species": "s__Streptococcus suis_I", "ani": 94.3923, "matched_fragments": 501, "total_fragments": 660, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016743335.1", "gtdb_species": "s__Streptococcus suis_Y", "ani": 94.3521, "matched_fragments": 511, "total_fragments": 660, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.53", "min_intra_species_ani": "95.45", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.78", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000440115.1", "gtdb_species": "s__Streptococcus suis_L", "ani": 93.0937, "matched_fragments": 510, "total_fragments": 660, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002964575.1", "gtdb_species": "s__Streptococcus suis_R", "ani": 86.9766, "matched_fragments": 455, "total_fragments": 660, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000440555.1", "gtdb_species": "s__Streptococcus suis_N", "ani": 86.5887, "matched_fragments": 432, "total_fragments": 660, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.61", "min_intra_species_ani": "95.42", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.79", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_016775005.1", "gtdb_species": "s__Streptococcus suis_X", "ani": 86.4942, "matched_fragments": 373, "total_fragments": 660, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.21", "min_intra_species_ani": "97.65", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" } ] }, 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