{
    "type": "genome",
    "identifier": "GCF_000295095.1",
    "organism": "Actinomyces timonensis DSM 23838",
    "title": "Actinomyces timonensis DSM 23838",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "URMITE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000295095.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02472053",
        "wgs_master": "AKGF00000000.1",
        "refseq_category": "reference genome",
        "taxid": "521393",
        "species_taxid": "1288391",
        "organism_name": "Actinomyces timonensis DSM 23838",
        "infraspecific_name": "strain=7400942",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2012/09/14",
        "asm_name": "ASM29509v1",
        "asm_submitter": "URMITE",
        "gbrs_paired_asm": "GCA_000295095.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/295/095/GCF_000295095.1_ASM29509v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2932944",
        "genome_size_ungapped": "2913054",
        "gc_percent": "71.000000",
        "replicon_count": "0",
        "scaffold_count": "4",
        "contig_count": "40",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000295095.1-RS_2024_04_22",
        "annotation_date": "2024-04-22",
        "total_gene_count": "2556",
        "protein_coding_gene_count": "2454",
        "non_coding_gene_count": "56",
        "pubmed_id": "23144376"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2012-09-14",
    "dateModified": "2012-09-14",
    "datePublished": "2012-09-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Actinomyces timonensis DSM 23838"
        ],
        "sample_taxid": [
            "521393"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France: Marseille"
        ],
        "sample_host_location_id": [],
        "data_size": "0.781 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2932944",
        "Number of Sequences": "4",
        "Longest Sequences (bp)": "1430417",
        "N50 (bp)": "923796",
        "Gap Ratio (%)": "0.678158",
        "GCcontent (%)": "71.2",
        "Number of CDSs": "2527",
        "Average Protein Length": "340.2",
        "Coding Ratio (%)": "87.9",
        "Number of rRNAs": "2",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Actinomyces timonensis",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
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                "accession": "GCA_001995055.1",
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                "species_taxid": 52767,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "accession": "GCA_900445045.1",
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            },
            {
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces gaoshouyii",
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                "accession": "GCA_002072175.1",
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                "relation_to_type": "type",
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            },
            {
                "organism_name": "Actinomyces marmotae",
                "strain": "strain=zg-325",
                "accession": "GCA_009829655.1",
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                "relation_to_type": "type",
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                "matched_fragments": 645,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanitalea stevensii",
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                "accession": "GCA_014837105.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Georgenia wutianyii",
                "strain": "strain=Z294",
                "accession": "GCA_006349365.1",
                "taxid": 2585135,
                "species_taxid": 2585135,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7796,
                "matched_fragments": 322,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ruania suaedae",
                "strain": "strain=LR1S40",
                "accession": "GCA_021049265.1",
                "taxid": 2897774,
                "species_taxid": 2897774,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
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        ],
        "cc_result": {
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            "contamination": 0.0,
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                "accession": "GCF_000295095.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
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            },
            {
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "23838"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}