{ "type": "genome", "identifier": "GCF_000295855.1", "organism": "Mycolicibacterium fortuitum subsp. fortuitum DSM 46621 = ATCC 6841 = JCM 6387", "title": "Mycolicibacterium fortuitum subsp. fortuitum DSM 46621 = ATCC 6841 = JCM 6387", "description": "na", "data type": "Genome sequencing and assembly", "organization": "KAUST", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000295855.1", "bioproject": "PRJNA224116", "biosample": "SAMN02470125", "wgs_master": "ALQB00000000.1", "refseq_category": "na", "taxid": "1214102", "species_taxid": "1766", "organism_name": "Mycolicibacterium fortuitum subsp. fortuitum DSM 46621 = ATCC 6841 = JCM 6387", "infraspecific_name": "strain=DSM 46621", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/09/12", "asm_name": "ASM29585v1", "asm_submitter": "KAUST", "gbrs_paired_asm": "GCA_000295855.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/295/855/GCF_000295855.1_ASM29585v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6349738", "genome_size_ungapped": "6300050", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "82", "contig_count": "325", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000295855.1-RS_2024_05_15", "annotation_date": "2024-05-15", "total_gene_count": "6319", "protein_coding_gene_count": "6052", "non_coding_gene_count": "61", "pubmed_id": "23105073" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-09-12", "dateModified": "2012-09-12", "datePublished": "2012-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycolicibacterium fortuitum subsp. fortuitum DSM 46621 = ATCC 6841 = JCM 6387" ], "sample_taxid": [ "1214102" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.748 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6349738", "Number of Sequences": "82", "Longest Sequences (bp)": "543975", "N50 (bp)": "159889", "Gap Ratio (%)": "0.782520", "GCcontent (%)": "66.2", "Number of CDSs": "5954", "Average Protein Length": "313.1", "Coding Ratio (%)": "88.1", "Number of rRNAs": "3", "Number of tRNAs": "64", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycolicibacterium fortuitum subsp. fortuitum", "strain": "strain=DSM 46621", "accession": "GCA_000295855.1", "taxid": 144549, "species_taxid": 1766, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2065, "total_fragments": 2075, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycolicibacterium fortuitum subsp. fortuitum", "strain": "strain=JCM 6387", "accession": "GCA_022179545.1", "taxid": 144549, "species_taxid": 1766, "relation_to_type": "type", "validated": true, "ani": 99.9637, "matched_fragments": 2051, "total_fragments": 2075, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycolicibacterium fortuitum subsp. acetamidolyticum", "strain": "strain=JCM6368", "accession": "GCA_001570465.1", "taxid": 144550, "species_taxid": 1766, "relation_to_type": "type", "validated": true, "ani": 98.7053, "matched_fragments": 1926, "total_fragments": 2075, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycolicibacterium peregrinum", "strain": "strain=DSM 43271", "accession": "GCA_002102345.1", 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98668, "species_taxid": 98668, "relation_to_type": "type", "validated": true, "ani": 87.0071, "matched_fragments": 1659, "total_fragments": 2075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium boenickei", "strain": "strain=JCM 15653", "accession": "GCA_010731295.1", "taxid": 146017, "species_taxid": 146017, "relation_to_type": "type", "validated": true, "ani": 86.9989, "matched_fragments": 1671, "total_fragments": 2075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium nivoides", "strain": "strain=DL90", "accession": "GCA_003855255.1", "taxid": 2487344, "species_taxid": 2487344, "relation_to_type": "type", "validated": true, "ani": 86.8875, "matched_fragments": 1690, "total_fragments": 2075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium alvei", "strain": "strain=JCM 12272", "accession": "GCA_010727325.1", "taxid": 67081, "species_taxid": 67081, "relation_to_type": "type", "validated": true, "ani": 86.3131, "matched_fragments": 1459, "total_fragments": 2075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium houstonense", "strain": "strain=type strain: ATCC 49403", "accession": "GCA_900078665.2", "taxid": 146021, "species_taxid": 146021, "relation_to_type": "type", "validated": true, "ani": 85.9027, "matched_fragments": 1629, "total_fragments": 2075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium crocinum", "strain": "strain=JCM 16369", "accession": "GCA_022370635.3", "taxid": 388459, "species_taxid": 388459, "relation_to_type": "type", "validated": true, "ani": 79.4433, "matched_fragments": 841, "total_fragments": 2075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium vinylchloridicum", "strain": "strain=CECT 8761", "accession": "GCA_013404075.1", "taxid": 2736928, "species_taxid": 2736928, 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100.0, "matched_fragments": 2065, "total_fragments": 2075, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.13", "min_intra_species_ani": "96.41", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 30, "status": "conclusive" }, { "accession": "GCF_001665625.1", "gtdb_species": "s__Mycobacterium peregrinum_B", "ani": 88.1225, "matched_fragments": 1701, "total_fragments": 2075, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.32", "min_intra_species_ani": "98.32", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002102345.1", "gtdb_species": "s__Mycobacterium peregrinum", "ani": 88.0976, 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