{
    "type": "genome",
    "identifier": "GCF_000296445.1",
    "organism": "Slackia piriformis YIT 12062",
    "title": "Slackia piriformis YIT 12062",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Broad Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000296445.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02595396",
        "wgs_master": "ADMD00000000.1",
        "refseq_category": "reference genome",
        "taxid": "742818",
        "species_taxid": "626934",
        "organism_name": "Slackia piriformis YIT 12062",
        "infraspecific_name": "strain=YIT 12062",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2012/09/17",
        "asm_name": "Slac_piri_YIT_12062_V1",
        "asm_submitter": "Broad Institute",
        "gbrs_paired_asm": "GCA_000296445.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/296/445/GCF_000296445.1_Slac_piri_YIT_12062_V1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2119335",
        "genome_size_ungapped": "2100457",
        "gc_percent": "57.500000",
        "replicon_count": "0",
        "scaffold_count": "5",
        "contig_count": "13",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000296445.1-RS_2024_12_13",
        "annotation_date": "2024-12-13",
        "total_gene_count": "1824",
        "protein_coding_gene_count": "1742",
        "non_coding_gene_count": "70",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2012-09-17",
    "dateModified": "2012-09-17",
    "datePublished": "2012-09-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Slackia piriformis YIT 12062"
        ],
        "sample_taxid": [
            "742818"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.593 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2119335",
        "Number of Sequences": "5",
        "Longest Sequences (bp)": "1804830",
        "N50 (bp)": "1804830",
        "Gap Ratio (%)": "0.890751",
        "GCcontent (%)": "57.7",
        "Number of CDSs": "1829",
        "Average Protein Length": "327.8",
        "Coding Ratio (%)": "84.9",
        "Number of rRNAs": "11",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Slackia piriformis",
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            {
                "organism_name": "Slackia faecicanis",
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                "species_taxid": 255723,
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                "status": "below_threshold"
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            },
            {
                "organism_name": "Collinsella stercoris",
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                "accession": "GCA_025149625.1",
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                "species_taxid": 147206,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Slackia isoflavoniconvertens",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Senegalimassilia anaerobia",
                "strain": "strain=type strain: JC110",
                "accession": "GCA_000236865.1",
                "taxid": 1473216,
                "species_taxid": 1473216,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2871,
                "matched_fragments": 125,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Slackia equolifaciens",
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                "taxid": 498718,
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                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonibacter pamelaeae",
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                "accession": "GCA_000210055.1",
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                "status": "below_threshold"
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            {
                "organism_name": "Eggerthella sinensis",
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                "species_taxid": 242230,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3207,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eggerthella sinensis",
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                "species_taxid": 242230,
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                "validated": true,
                "ani": 77.2559,
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                "total_fragments": 704,
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                "status": "below_threshold"
            }
        ],
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            "contamination": 0.0,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Slackia_A",
                "ani_circumscription_radius": 95.0,
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            },
            {
                "accession": "GCA_900553655.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Slackia_A",
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            {
                "accession": "GCA_900553775.1",
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            {
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "YIT",
        "12062"
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}