{ "type": "genome", "identifier": "GCF_000296815.2", "organism": "Fibrisoma limi BUZ 3", "title": "Fibrisoma limi BUZ 3", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CeBiTec, Bielefeld University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000296815.2", "bioproject": "PRJNA224116", "biosample": "SAMEA2272395", "wgs_master": "CAIT00000000.1", "refseq_category": "reference genome", "taxid": "1185876", "species_taxid": "663275", "organism_name": "Fibrisoma limi BUZ 3", "infraspecific_name": "strain=type strain:BUZ 3", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/05/16", "asm_name": "ASM29681v2", "asm_submitter": "CeBiTec, Bielefeld University", "gbrs_paired_asm": "GCA_000296815.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/296/815/GCF_000296815.2_ASM29681v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7626970", "genome_size_ungapped": "7626970", "gc_percent": "52.500000", "replicon_count": "3", "scaffold_count": "14", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000296815.2-RS_2024_09_16", "annotation_date": "2024-09-16", "total_gene_count": "6359", "protein_coding_gene_count": "6284", "non_coding_gene_count": "52", "pubmed_id": "22843583" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-05-16", "dateModified": "2012-05-16", "datePublished": "2012-05-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Fibrisoma limi BUZ 3" ], "sample_taxid": [ "1185876" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "2.168 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7626970", "Number of Sequences": "14", "Longest Sequences (bp)": "2025211", "N50 (bp)": "2007105", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.7", "Number of CDSs": "6294", "Average Protein Length": "356.0", "Coding Ratio (%)": "88.1", "Number of rRNAs": "9", "Number of tRNAs": "40", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Fibrisoma limi", "strain": "strain=BUZ 3", "accession": "GCA_000296815.2", "taxid": 663275, "species_taxid": 663275, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2534, "total_fragments": 2536, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Fibrisoma montanum", "strain": "strain=HYT19", "accession": "GCA_003583365.1", "taxid": 2305895, "species_taxid": 2305895, "relation_to_type": "type", "validated": true, "ani": 85.5917, "matched_fragments": 1968, "total_fragments": 2536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma taeanense", "strain": "strain=TS118", "accession": "GCA_013127955.1", "taxid": 2735870, "species_taxid": 2735870, "relation_to_type": "type", "validated": true, "ani": 77.4448, "matched_fragments": 496, "total_fragments": 2536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma lacussanchae", "strain": "strain=CPCC 100624", "accession": "GCA_005870035.1", "taxid": 1884249, "species_taxid": 1884249, "relation_to_type": "type", "validated": true, "ani": 77.3283, "matched_fragments": 475, "total_fragments": 2536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma sordidisoli", "strain": "strain=TY50", "accession": "GCA_004138325.1", "taxid": 2502893, "species_taxid": 2502893, "relation_to_type": "type", "validated": true, "ani": 77.2309, "matched_fragments": 489, "total_fragments": 2536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma rigui", "strain": "strain=KCTC 12531", "accession": "GCA_002067135.1", "taxid": 564064, "species_taxid": 564064, "relation_to_type": "type", "validated": true, "ani": 76.9279, "matched_fragments": 427, "total_fragments": 2536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma oryzae", "strain": "strain=DSM 28354", "accession": "GCA_003002825.1", "taxid": 1469603, "species_taxid": 1469603, "relation_to_type": "type", "validated": true, "ani": 76.7983, "matched_fragments": 374, "total_fragments": 2536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fibrella aestuarina", "strain": "strain=BUZ 2", "accession": "GCA_000331105.1", "taxid": 651143, "species_taxid": 651143, "relation_to_type": "type", "validated": true, "ani": 76.7699, "matched_fragments": 354, "total_fragments": 2536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rudanella paleaurantiibacter", "strain": "strain=HX-22-17", "accession": "GCA_009184635.1", "taxid": 2614655, "species_taxid": 2614655, "relation_to_type": "type", "validated": true, "ani": 76.7402, "matched_fragments": 315, "total_fragments": 2536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma validum", "strain": "strain=BT704", "accession": "GCA_014699035.1", "taxid": 2771355, "species_taxid": 2771355, "relation_to_type": "type", "validated": true, "ani": 76.6417, "matched_fragments": 338, "total_fragments": 2536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma panaciterrae", "strain": "strain=DSM 21099", "accession": "GCA_000374025.1", "taxid": 496058, 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398, "total_fragments": 2536, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013375035.1", "gtdb_species": "s__Spirosoma sp013375035", "ani": 77.0649, "matched_fragments": 377, "total_fragments": 2536, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002067135.1", "gtdb_species": "s__Spirosoma rigui", "ani": 76.8752, "matched_fragments": 425, "total_fragments": 2536, "gtdb_taxonomy": 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"spiral_cell_shape": null }, "_genome_taxon": [ "Fibrisoma", "limi", "BUZ", "3" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }