{ "type": "genome", "identifier": "GCF_000298075.1", "organism": "Staphylococcus massiliensis CCUG 55927", "title": "Staphylococcus massiliensis CCUG 55927", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000298075.1", "bioproject": "PRJNA224116", "biosample": "SAMN02472049", "wgs_master": "AKGE00000000.1", "refseq_category": "na", "taxid": "1189613", "species_taxid": "555791", "organism_name": "Staphylococcus massiliensis CCUG 55927", "infraspecific_name": "strain=CCUG 55927", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/09/21", "asm_name": "ASM29807v1", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_000298075.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/298/075/GCF_000298075.1_ASM29807v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2366595", "genome_size_ungapped": "2321067", "gc_percent": "36.500000", "replicon_count": "0", "scaffold_count": "8", "contig_count": "71", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000298075.1-RS_2024_03_27", "annotation_date": "2024-03-27", "total_gene_count": "2277", "protein_coding_gene_count": "2150", "non_coding_gene_count": "65", "pubmed_id": "23209235" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-09-21", "dateModified": "2012-09-21", "datePublished": "2012-09-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Staphylococcus massiliensis CCUG 55927" ], "sample_taxid": [ "1189613" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.654 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2366595", "Number of Sequences": "8", "Longest Sequences (bp)": "1761431", "N50 (bp)": "1761431", "Gap Ratio (%)": "1.923777", "GCcontent (%)": "36.5", "Number of CDSs": "2224", "Average Protein Length": "291.2", "Coding Ratio (%)": "82.1", "Number of rRNAs": "3", "Number of tRNAs": "57", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Staphylococcus massiliensis", "strain": "strain=CCUG 55927", "accession": "GCA_000298075.1", "taxid": 555791, "species_taxid": 555791, "relation_to_type": "type", "validated": true, "ani": 99.9998, "matched_fragments": 782, 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"strain=DSM 6717", "accession": "GCA_002901925.1", "taxid": 74703, "species_taxid": 29388, "relation_to_type": "type", "validated": true, "ani": 78.6172, "matched_fragments": 169, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus cohnii subsp. barensis", "strain": "strain=SC5", "accession": "GCA_014180735.1", "taxid": 2834574, "species_taxid": 29382, "relation_to_type": "type", "validated": true, "ani": 78.5997, "matched_fragments": 179, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus pettenkoferi", "strain": "strain=CCUG 51270", "accession": "GCA_002902685.1", "taxid": 170573, "species_taxid": 170573, "relation_to_type": "type", "validated": true, "ani": 78.5839, "matched_fragments": 158, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus pasteuri", "strain": "strain=DSM 10656", "accession": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Staphylococcus", "massiliensis", "CCUG", "55927" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }