{
    "type": "genome",
    "identifier": "GCF_000298235.1",
    "organism": "Gordonia namibiensis NBRC 108229",
    "title": "Gordonia namibiensis NBRC 108229",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Technology and Evaluation",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000298235.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00041807",
        "wgs_master": "BAHE00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1208314",
        "species_taxid": "168480",
        "organism_name": "Gordonia namibiensis NBRC 108229",
        "infraspecific_name": "strain=NBRC 108229",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2012/09/07",
        "asm_name": "ASM29823v1",
        "asm_submitter": "National Institute of Technology and Evaluation",
        "gbrs_paired_asm": "GCA_000298235.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/298/235/GCF_000298235.1_ASM29823v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4941607",
        "genome_size_ungapped": "4941607",
        "gc_percent": "67.500000",
        "replicon_count": "0",
        "scaffold_count": "67",
        "contig_count": "67",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000298235.1-RS_2024_08_08",
        "annotation_date": "2024-08-08",
        "total_gene_count": "4469",
        "protein_coding_gene_count": "4373",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2012-09-07",
    "dateModified": "2012-09-07",
    "datePublished": "2012-09-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gordonia namibiensis NBRC 108229"
        ],
        "sample_taxid": [
            "1208314"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.347 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4941607",
        "Number of Sequences": "67",
        "Longest Sequences (bp)": "382821",
        "N50 (bp)": "142712",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "67.6",
        "Number of CDSs": "4433",
        "Average Protein Length": "334.6",
        "Coding Ratio (%)": "90.0",
        "Number of rRNAs": "3",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Gordonia namibiensis",
                "strain": "strain=NBRC 108229",
                "accession": "GCA_000298235.1",
                "taxid": 168480,
                "species_taxid": 168480,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1609,
                "total_fragments": 1613,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Gordonia rubripertincta",
                "strain": "strain=NBRC 101908",
                "accession": "GCA_000327325.1",
                "taxid": 36822,
                "species_taxid": 36822,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.5825,
                "matched_fragments": 1366,
                "total_fragments": 1613,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia rubripertincta",
                "strain": "strain=ATCC 14352",
                "accession": "GCA_012396225.1",
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                "species_taxid": 36822,
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                "ani": 92.5084,
                "matched_fragments": 1403,
                "total_fragments": 1613,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia alkanivorans",
                "strain": "strain=NBRC 16433",
                "accession": "GCA_000225505.1",
                "taxid": 84096,
                "species_taxid": 84096,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.0219,
                "matched_fragments": 1364,
                "total_fragments": 1613,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia westfalica",
                "strain": "strain=DSM 44215",
                "accession": "GCA_900105725.1",
                "taxid": 158898,
                "species_taxid": 158898,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.8285,
                "matched_fragments": 1347,
                "total_fragments": 1613,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia amicalis",
                "strain": "strain=NBRC 100051",
                "accession": "GCA_000332995.1",
                "taxid": 89053,
                "species_taxid": 89053,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.3549,
                "matched_fragments": 1317,
                "total_fragments": 1613,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia amicalis",
                "strain": "strain=DSM 44461",
                "accession": "GCA_012395955.1",
                "taxid": 89053,
                "species_taxid": 89053,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.3004,
                "matched_fragments": 1324,
                "total_fragments": 1613,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
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            {
                "accession": "GCF_000298235.1",
                "gtdb_species": "s__Gordonia namibiensis",
                "ani": 100.0,
                "matched_fragments": 1609,
                "total_fragments": 1613,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.13",
                "min_intra_species_ani": "97.13",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000327325.1",
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                "total_fragments": 1613,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.55",
                "min_intra_species_ani": "98.07",
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                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_000225505.1",
                "gtdb_species": "s__Gordonia alkanivorans",
                "ani": 92.0282,
                "matched_fragments": 1364,
                "total_fragments": 1613,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.26",
                "min_intra_species_ani": "97.87",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_900105725.1",
                "gtdb_species": "s__Gordonia westfalica",
                "ani": 88.8499,
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                "total_fragments": 1613,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000332995.1",
                "gtdb_species": "s__Gordonia amicalis",
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                "matched_fragments": 1319,
                "total_fragments": 1613,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
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                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_000344155.1",
                "gtdb_species": "s__Gordonia paraffinivorans",
                "ani": 84.4819,
                "matched_fragments": 1178,
                "total_fragments": 1613,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.97",
                "min_intra_species_ani": "98.74",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 12,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.29,
        "cell_length": -0.067,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": 29.25,
        "optimum_ph": 7.479,
        "genome_size": 4941607.0,
        "gc_content": 67.58,
        "coding_genes": 4526.729,
        "rRNA16S_genes": 2.666,
        "tRNA_genes": 48.25,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Gordonia",
        "namibiensis",
        "NBRC",
        "108229"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}