{
    "type": "genome",
    "identifier": "GCF_000298315.2",
    "organism": "Rhizobium grahamii CCGE 502",
    "title": "Rhizobium grahamii CCGE 502",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Universidad Nacional Autonoma de Mex",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000298315.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02469448",
        "wgs_master": "AEYE00000000.2",
        "refseq_category": "na",
        "taxid": "990285",
        "species_taxid": "1120045",
        "organism_name": "Rhizobium grahamii CCGE 502",
        "infraspecific_name": "strain=CCGE 502",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/06/18",
        "asm_name": "ASM29831v2",
        "asm_submitter": "Universidad Nacional Autonoma de Mex",
        "gbrs_paired_asm": "GCA_000298315.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/298/315/GCF_000298315.2_ASM29831v2",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7146037",
        "genome_size_ungapped": "7146037",
        "gc_percent": "59.500000",
        "replicon_count": "2",
        "scaffold_count": "80",
        "contig_count": "80",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000298315.2-RS_2024_08_07",
        "annotation_date": "2024-08-07",
        "total_gene_count": "6989",
        "protein_coding_gene_count": "6612",
        "non_coding_gene_count": "62",
        "pubmed_id": "23144400"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-06-18",
    "dateModified": "2013-06-18",
    "datePublished": "2013-06-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rhizobium grahamii CCGE 502"
        ],
        "sample_taxid": [
            "990285"
        ],
        "sample_host_organism": [
            "Dalea leporina"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Mexico: Jalisco"
        ],
        "sample_host_location_id": [],
        "data_size": "2.019 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7146037",
        "Number of Sequences": "80",
        "Longest Sequences (bp)": "607513",
        "N50 (bp)": "343668",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "59.4",
        "Number of CDSs": "7069",
        "Average Protein Length": "286.0",
        "Coding Ratio (%)": "84.9",
        "Number of rRNAs": "6",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Rhizobium grahamii",
                "strain": "strain=CCGE 502",
                "accession": "GCA_000298315.2",
                "taxid": 1120045,
                "species_taxid": 1120045,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2348,
                "total_fragments": 2351,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Rhizobium altiplani",
                "strain": "strain=BR 10423",
                "accession": "GCA_001542405.1",
                "taxid": 1864509,
                "species_taxid": 1864509,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.7845,
                "matched_fragments": 1492,
                "total_fragments": 2351,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium favelukesii",
                "strain": "strain=LPU83",
                "accession": "GCA_000577275.2",
                "taxid": 348824,
                "species_taxid": 348824,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.5542,
                "matched_fragments": 1443,
                "total_fragments": 2351,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium tibeticum",
                "strain": "strain=CGMCC 1.7071",
                "accession": "GCA_900110205.1",
                "taxid": 501024,
                "species_taxid": 501024,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.5279,
                "matched_fragments": 1411,
                "total_fragments": 2351,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium tibeticum",
                "strain": "",
                "accession": "GCA_900108425.1",
                "taxid": 501024,
                "species_taxid": 501024,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.5153,
                "matched_fragments": 1395,
                "total_fragments": 2351,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium croatiense",
                "strain": "strain=13T",
                "accession": "GCA_019793465.1",
                "taxid": 2867516,
                "species_taxid": 2867516,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.1886,
                "matched_fragments": 949,
                "total_fragments": 2351,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium vallis",
                "strain": "strain=CCBAU 65647",
                "accession": "GCA_003985155.1",
                "taxid": 634290,
                "species_taxid": 634290,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9698,
                "matched_fragments": 985,
                "total_fragments": 2351,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium ruizarguesonis",
                "strain": "strain=UPM1133",
                "accession": "GCA_012349115.1",
                "taxid": 2081791,
                "species_taxid": 2081791,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9146,
                "matched_fragments": 1007,
                "total_fragments": 2351,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium jaguaris",
                "strain": "strain=CCGE525",
                "accession": "GCA_003627755.1",
                "taxid": 1312183,
                "species_taxid": 1312183,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5188,
                "matched_fragments": 785,
                "total_fragments": 2351,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella zoogloeoides",
                "strain": "strain=ATCC 19623",
                "accession": "GCA_020883495.1",
                "taxid": 352475,
                "species_taxid": 352475,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3679,
                "matched_fragments": 598,
                "total_fragments": 2351,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella sumterensis",
                "strain": "strain=MEC087",
                "accession": "GCA_004514425.2",
                "taxid": 1967501,
                "species_taxid": 1967501,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3138,
                "matched_fragments": 566,
                "total_fragments": 2351,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella curvata",
                "strain": "strain=C3",
                "accession": "GCA_022899935.1",
                "taxid": 1817964,
                "species_taxid": 1817964,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2675,
                "matched_fragments": 608,
                "total_fragments": 2351,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella pollutisoli",
                "strain": "strain=KCTC 52677",
                "accession": "GCA_024609765.1",
                "taxid": 2250594,
                "species_taxid": 2250594,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1279,
                "matched_fragments": 572,
                "total_fragments": 2351,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ciceribacter ferrooxidans",
                "strain": "strain=F8825",
                "accession": "GCA_004137355.1",
                "taxid": 2509717,
                "species_taxid": 2509717,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8223,
                "matched_fragments": 536,
                "total_fragments": 2351,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000298315.2",
                "gtdb_species": "s__Rhizobium grahamii",
                "ani": 100.0,
                "matched_fragments": 2348,
                "total_fragments": 2351,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.32",
                "min_intra_species_ani": "97.32",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_014194695.1",
                "gtdb_species": "s__Rhizobium sp014194695",
                "ani": 92.7455,
                "matched_fragments": 1743,
                "total_fragments": 2351,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.49",
                "min_intra_species_ani": "98.48",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_001542405.1",
                "gtdb_species": "s__Rhizobium altiplani",
                "ani": 86.7715,
                "matched_fragments": 1492,
                "total_fragments": 2351,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.38",
                "min_intra_species_ani": "95.34",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.71",
                "num_clustered_genomes": 19,
                "status": "-"
            },
            {
                "accession": "GCF_002211365.1",
                "gtdb_species": "s__Rhizobium sp002211365",
                "ani": 86.4464,
                "matched_fragments": 1323,
                "total_fragments": 2351,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.54",
                "min_intra_species_ani": "97.07",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000282035.1",
                "gtdb_species": "s__Rhizobium sp000282035",
                "ani": 86.2623,
                "matched_fragments": 1338,
                "total_fragments": 2351,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.51",
                "min_intra_species_ani": "98.50",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000312665.1",
                "gtdb_species": "s__Rhizobium mesoamericanum",
                "ani": 85.7701,
                "matched_fragments": 1377,
                "total_fragments": 2351,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.16",
                "min_intra_species_ani": "96.16",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000577275.2",
                "gtdb_species": "s__Rhizobium favelukesii",
                "ani": 85.5533,
                "matched_fragments": 1442,
                "total_fragments": 2351,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.5244,
                "mean_intra_species_ani": "99.59",
                "min_intra_species_ani": "99.23",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000746265.1",
                "gtdb_species": "s__Rhizobium sp000746265",
                "ani": 85.3837,
                "matched_fragments": 1322,
                "total_fragments": 2351,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900466605.1",
                "gtdb_species": "s__Rhizobium sp900466605",
                "ani": 85.2226,
                "matched_fragments": 1315,
                "total_fragments": 2351,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009498215.1",
                "gtdb_species": "s__Rhizobium grahamii_A",
                "ani": 84.061,
                "matched_fragments": 1084,
                "total_fragments": 2351,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001429725.1",
                "gtdb_species": "s__Rhizobium sp001429725",
                "ani": 84.0447,
                "matched_fragments": 1082,
                "total_fragments": 2351,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900468535.1",
                "gtdb_species": "s__Rhizobium sp900468535",
                "ani": 83.8656,
                "matched_fragments": 1055,
                "total_fragments": 2351,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900470805.1",
                "gtdb_species": "s__Rhizobium sp900470805",
                "ani": 81.9503,
                "matched_fragments": 939,
                "total_fragments": 2351,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.23,
        "cell_length": 0.207,
        "doubling_h": 0.225,
        "growth_tmp": 28.733,
        "optimum_tmp": 28.423,
        "optimum_ph": 6.983,
        "genome_size": 6239444.624,
        "gc_content": 60.147,
        "coding_genes": 6587.615,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 51.725,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.793,
        "range_salinity": null,
        "facultative_respiration": 0.05,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.95,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Rhizobium",
        "grahamii",
        "CCGE",
        "502"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}