{ "type": "genome", "identifier": "GCF_000299335.2", "organism": "Isoalcanivorax pacificus W11-5", "title": "Isoalcanivorax pacificus W11-5", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Third Institute of State Oceanic Administration (SOA), China.", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000299335.2", "bioproject": "PRJNA224116", "biosample": "SAMN02471159", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "391936", "species_taxid": "1306787", "organism_name": "Isoalcanivorax pacificus W11-5", "infraspecific_name": "strain=W11-5", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/01/09", "asm_name": "ASM29933v2", "asm_submitter": "The Third Institute of State Oceanic Administration (SOA), China.", "gbrs_paired_asm": "GCA_000299335.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/299/335/GCF_000299335.2_ASM29933v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4168427", "genome_size_ungapped": "4168427", "gc_percent": "62.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000299335.2-RS_2024_03_27", "annotation_date": "2024-03-27", "total_gene_count": "3786", "protein_coding_gene_count": "3710", "non_coding_gene_count": "57", "pubmed_id": "23209202" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-01-09", "dateModified": "2015-01-09", "datePublished": "2015-01-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Isoalcanivorax pacificus W11-5" ], "sample_taxid": [ "391936" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean" ], "sample_host_location_id": [], "data_size": "1.157 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4168427", "Number of Sequences": "1", "Longest Sequences (bp)": "4168427", "N50 (bp)": "4168427", "Gap Ratio (%)": "0.000024", "GCcontent (%)": "62.6", "Number of CDSs": "3752", "Average Protein Length": "332.8", "Coding Ratio (%)": "89.9", "Number of rRNAs": "6", "Number of tRNAs": "46", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alcanivorax pacificus", "strain": "strain=W11-5", "accession": "GCA_000299335.2", "taxid": 1306787, "species_taxid": 1306787, 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"matched_fragments": 447, "total_fragments": 1389, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax marinus", "strain": "strain=R8-12", "accession": "GCA_025532125.1", "taxid": 1177169, "species_taxid": 1177169, "relation_to_type": "type", "validated": true, "ani": 79.0252, "matched_fragments": 419, "total_fragments": 1389, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax gelatiniphagus", "strain": "strain=MEBiC 08158", "accession": "GCA_005938655.1", "taxid": 1194167, "species_taxid": 1194167, "relation_to_type": "type", "validated": true, "ani": 78.9093, "matched_fragments": 454, "total_fragments": 1389, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax venustensis", "strain": "strain=ISO4", "accession": "GCA_015356855.1", "taxid": 172371, "species_taxid": 172371, "relation_to_type": "type", "validated": true, "ani": 78.8861, "matched_fragments": 446, "total_fragments": 1389, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax hongdengensis", "strain": "strain=A-11-3", "accession": "GCA_000300995.1", "taxid": 519051, "species_taxid": 519051, "relation_to_type": "type", "validated": true, "ani": 78.5394, "matched_fragments": 380, "total_fragments": 1389, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax balearicus", "strain": "strain=MACL04", "accession": "GCA_025532145.1", "taxid": 413232, "species_taxid": 413232, "relation_to_type": "type", "validated": true, "ani": 78.4415, "matched_fragments": 370, "total_fragments": 1389, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax profundi", "strain": "strain=MTEO17", "accession": "GCA_003597125.1", "taxid": 2338368, "species_taxid": 2338368, "relation_to_type": "type", "validated": true, "ani": 77.9715, "matched_fragments": 256, "total_fragments": 1389, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax jadensis", "strain": "strain=T9", "accession": "GCA_000756655.1", "taxid": 64988, "species_taxid": 64988, "relation_to_type": "type", "validated": true, "ani": 77.8892, "matched_fragments": 353, "total_fragments": 1389, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas hydrolytica", "strain": "strain=DSWY01", "accession": "GCA_021495345.2", "taxid": 2493633, "species_taxid": 2493633, "relation_to_type": "type", "validated": true, "ani": 77.3759, "matched_fragments": 241, "total_fragments": 1389, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 77.191, "matched_fragments": 254, "total_fragments": 1389, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas insulae", "strain": "strain=UL073", 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