{ "type": "genome", "identifier": "GCF_000299355.1", "organism": "Gottschalkia acidurici 9a", "title": "Gottschalkia acidurici 9a", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000299355.1", "bioproject": "PRJNA224116", "biosample": "SAMN02603272", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1128398", "species_taxid": "1556", "organism_name": "Gottschalkia acidurici 9a", "infraspecific_name": "strain=9a", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/09/27", "asm_name": "ASM29935v1", "asm_submitter": "Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory", "gbrs_paired_asm": "GCA_000299355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/299/355/GCF_000299355.1_ASM29935v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3108248", "genome_size_ungapped": "3108248", "gc_percent": "30.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000299355.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3066", "protein_coding_gene_count": "2933", "non_coding_gene_count": "104", "pubmed_id": "23240052" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-09-27", "dateModified": "2012-09-27", "datePublished": "2012-09-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Gottschalkia acidurici 9a" ], "sample_taxid": [ "1128398" 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95, "status": "below_threshold" }, { "organism_name": "Anaeromonas frigoriresistens", "strain": "strain=D2Q-11", "accession": "GCA_016820655.1", "taxid": 2683708, "species_taxid": 2683708, "relation_to_type": "type", "validated": true, "ani": 75.6657, "matched_fragments": 81, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caloranaerobacter azorensis", "strain": "strain=DSM 13643", "accession": "GCA_900129995.1", "taxid": 116090, "species_taxid": 116090, "relation_to_type": "type", "validated": true, "ani": 75.6159, "matched_fragments": 59, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraclostridium dentum", "strain": "strain=SKVG24", "accession": "GCA_012922555.1", "taxid": 2662455, "species_taxid": 2662455, "relation_to_type": "type", "validated": true, "ani": 75.6094, "matched_fragments": 88, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sporosalibacterium faouarense", "strain": "strain=SOL3f37", "accession": "GCA_016765695.1", "taxid": 516123, "species_taxid": 516123, "relation_to_type": "type", "validated": true, "ani": 75.442, "matched_fragments": 87, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaeromicrobium sediminis", "strain": "strain=DY2726D", "accession": "GCA_002270055.1", "taxid": 1478221, "species_taxid": 1478221, "relation_to_type": "type", "validated": true, "ani": 75.2542, "matched_fragments": 76, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium weizhouense", "strain": "strain=YB-6", "accession": "GCA_019431045.1", "taxid": 2859781, "species_taxid": 2859781, "relation_to_type": "type", "validated": true, "ani": 75.0975, "matched_fragments": 74, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000299355.1", "gtdb_species": "s__Gottschalkia acidurici", "ani": 100.0, "matched_fragments": 1035, "total_fragments": 1035, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Gottschalkiaceae;g__Gottschalkia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_001584565.1", "gtdb_species": "s__Clostridium_Y paradoxum", "ani": 77.798, "matched_fragments": 64, "total_fragments": 1035, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Clostridium_Y", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", 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