{ "type": "genome", "identifier": "GCF_000299635.1", "organism": "Vibrio vulnificus NBRC 15645 = ATCC 27562", "title": "Vibrio vulnificus NBRC 15645 = ATCC 27562", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000299635.1", "bioproject": "PRJNA224116", "biosample": "SAMN02469425", "wgs_master": "AMQV00000000.1", "refseq_category": "na", "taxid": "1219061", "species_taxid": "672", "organism_name": "Vibrio vulnificus NBRC 15645 = ATCC 27562", "infraspecific_name": "strain=ATCC 27562", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/09/27", "asm_name": "ASM29963v1", "asm_submitter": "Zhejiang University", "gbrs_paired_asm": "GCA_000299635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/299/635/GCF_000299635.1_ASM29963v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4327239", "genome_size_ungapped": "4327239", "gc_percent": "46.500000", "replicon_count": "0", "scaffold_count": "194", "contig_count": "194", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000299635.1-RS_2024_08_06", "annotation_date": "2024-08-06", "total_gene_count": "3939", "protein_coding_gene_count": "3776", "non_coding_gene_count": "82", "pubmed_id": "23209214" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-09-27", "dateModified": "2012-09-27", "datePublished": "2012-09-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio vulnificus NBRC 15645 = ATCC 27562" ], "sample_taxid": [ "1219061" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Florida" ], "sample_host_location_id": [], "data_size": "1.237 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 85.42, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4327239", "Number of Sequences": "194", "Longest Sequences (bp)": "428457", "N50 (bp)": "119940", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.7", "Number of CDSs": "3739", "Average Protein Length": "330.7", "Coding Ratio (%)": "85.7", "Number of rRNAs": "2", "Number of tRNAs": "69", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio vulnificus", "strain": "strain=ATCC 27562", "accession": "GCA_000299635.1", "taxid": 672, "species_taxid": 672, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 1372, "total_fragments": 1375, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio vulnificus", "strain": "strain=ATCC 27562", "accession": "GCA_002224265.1", "taxid": 672, "species_taxid": 672, "relation_to_type": "type", "validated": true, "ani": 99.994, "matched_fragments": 1375, "total_fragments": 1375, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio vulnificus", "strain": "strain=NCTC13647", "accession": "GCA_900460565.1", "taxid": 672, "species_taxid": 672, "relation_to_type": "type", "validated": true, "ani": 99.9881, "matched_fragments": 1375, "total_fragments": 1375, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio vulnificus", "strain": "strain=NBRC 15645", "accession": "GCA_001591065.1", "taxid": 672, "species_taxid": 672, "relation_to_type": "type", "validated": true, "ani": 99.986, "matched_fragments": 1349, "total_fragments": 1375, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio cidicii", "strain": "strain=2756-81", "accession": "GCA_009763805.1", "taxid": 1763883, "species_taxid": 1763883, "relation_to_type": "type", "validated": true, "ani": 81.3742, "matched_fragments": 616, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio owensii", "strain": "strain=DY05", "accession": "GCA_000817815.1", "taxid": 696485, "species_taxid": 696485, "relation_to_type": "type", "validated": true, "ani": 80.2708, "matched_fragments": 484, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=JCM 19500", "accession": "GCA_009938205.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 79.6807, "matched_fragments": 294, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=LBS 2", "accession": "GCA_008830195.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 79.6517, "matched_fragments": 310, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio fortis", "strain": "strain=LMG 21557", "accession": "GCA_024347475.1", "taxid": 212667, "species_taxid": 212667, "relation_to_type": "type", "validated": true, "ani": 79.0415, "matched_fragments": 325, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio furnissii", "strain": "strain=PartQ-Vfurnissii-RM8376", "accession": "GCA_022869905.1", "taxid": 29494, "species_taxid": 29494, "relation_to_type": "type", "validated": true, "ani": 78.9446, "matched_fragments": 379, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 85.42, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002224265.1", 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81.3586, "matched_fragments": 618, "total_fragments": 1375, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.3805, "mean_intra_species_ani": "98.20", "min_intra_species_ani": "97.77", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.87", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCA_015767675.1", "gtdb_species": "s__Vibrio sp000960595", "ani": 81.0977, "matched_fragments": 626, "total_fragments": 1375, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.64", "min_intra_species_ani": "97.38", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.90", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_000764325.1", "gtdb_species": "s__Vibrio navarrensis", "ani": 80.9049, "matched_fragments": 602, 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