{
    "type": "genome",
    "identifier": "GCF_000300235.2",
    "organism": "Thalassospira xiamenensis M-5 = DSM 17429",
    "title": "Thalassospira xiamenensis M-5 = DSM 17429",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "The Third Institute of State Oceanic Administration (SOA)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000300235.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02471162",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1123366",
        "species_taxid": "220697",
        "organism_name": "Thalassospira xiamenensis M-5 = DSM 17429",
        "infraspecific_name": "strain=M-5",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/01/09",
        "asm_name": "ASM30023v2",
        "asm_submitter": "The Third Institute of State Oceanic Administration (SOA)",
        "gbrs_paired_asm": "GCA_000300235.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/300/235/GCF_000300235.2_ASM30023v2",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4768950",
        "genome_size_ungapped": "4768950",
        "gc_percent": "54.500000",
        "replicon_count": "2",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000300235.2-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "4414",
        "protein_coding_gene_count": "4319",
        "non_coding_gene_count": "77",
        "pubmed_id": "23209216"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-01-09",
    "dateModified": "2015-01-09",
    "datePublished": "2015-01-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thalassospira xiamenensis M-5 = DSM 17429"
        ],
        "sample_taxid": [
            "1123366"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "1.337 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4768950",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "4576570",
        "N50 (bp)": "4576570",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "54.7",
        "Number of CDSs": "4394",
        "Average Protein Length": "318.3",
        "Coding Ratio (%)": "88.0",
        "Number of rRNAs": "12",
        "Number of tRNAs": "62",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Thalassospira xiamenensis",
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                "accession": "GCA_000300235.2",
                "taxid": 220697,
                "species_taxid": 220697,
                "relation_to_type": "suspected-type",
                "validated": true,
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                "matched_fragments": 1589,
                "total_fragments": 1589,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Thalassospira xiamenensis",
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                "accession": "GCA_900156715.1",
                "taxid": 220697,
                "species_taxid": 220697,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9709,
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                "total_fragments": 1589,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Thalassospira permensis",
                "strain": "strain=NBRC 106175",
                "accession": "GCA_000714555.1",
                "taxid": 680197,
                "species_taxid": 680197,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.8252,
                "matched_fragments": 1381,
                "total_fragments": 1589,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Thalassospira xianhensis",
                "strain": "strain=MCCC 1A02616",
                "accession": "GCA_003326475.1",
                "taxid": 478503,
                "species_taxid": 478503,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.0133,
                "matched_fragments": 1250,
                "total_fragments": 1589,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thalassospira alkalitolerans",
                "strain": "strain=JCM 18968",
                "accession": "GCA_002115745.1",
                "taxid": 1293890,
                "species_taxid": 1293890,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.3055,
                "matched_fragments": 1155,
                "total_fragments": 1589,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thalassospira tepidiphila",
                "strain": "strain=MCCC 1A03514",
                "accession": "GCA_001662875.1",
                "taxid": 393657,
                "species_taxid": 393657,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2469,
                "matched_fragments": 910,
                "total_fragments": 1589,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thalassospira lucentensis",
                "strain": "strain=DSM 14000",
                "accession": "GCA_000421265.1",
                "taxid": 168935,
                "species_taxid": 168935,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.97,
                "matched_fragments": 912,
                "total_fragments": 1589,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kordiimonas marina",
                "strain": "strain=A6E486",
                "accession": "GCA_023006325.1",
                "taxid": 2872312,
                "species_taxid": 2872312,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2352,
                "matched_fragments": 60,
                "total_fragments": 1589,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000300235.2",
                "gtdb_species": "s__Thalassospira xiamenensis",
                "ani": 100.0,
                "matched_fragments": 1588,
                "total_fragments": 1589,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Thalassospiraceae;g__Thalassospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.55",
                "min_intra_species_ani": "97.14",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 23,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002115785.1",
                "gtdb_species": "s__Thalassospira sp002115785",
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                "matched_fragments": 1347,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Thalassospiraceae;g__Thalassospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003326475.1",
                "gtdb_species": "s__Thalassospira xianhensis",
                "ani": 91.0019,
                "matched_fragments": 1251,
                "total_fragments": 1589,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Thalassospiraceae;g__Thalassospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001613805.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Thalassospiraceae;g__Thalassospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.23",
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                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_002115745.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Thalassospiraceae;g__Thalassospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001662875.1",
                "gtdb_species": "s__Thalassospira tepidiphila",
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                "matched_fragments": 909,
                "total_fragments": 1589,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Thalassospiraceae;g__Thalassospira",
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                "num_clustered_genomes": 15,
                "status": "-"
            },
            {
                "accession": "GCF_000421265.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Thalassospiraceae;g__Thalassospira",
                "ani_circumscription_radius": 95.8797,
                "mean_intra_species_ani": "97.14",
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                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.19,
        "cell_length": 0.74,
        "doubling_h": null,
        "growth_tmp": 25.0,
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        "genome_size": 4782192.385,
        "gc_content": 53.975,
        "coding_genes": 4332.333,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 61.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
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        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 1.0
    },
    "_genome_taxon": [
        "Thalassospira",
        "xiamenensis",
        "M-5",
        "=",
        "DSM",
        "17429"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}