{
    "type": "genome",
    "identifier": "GCF_000300455.3",
    "organism": "Kosakonia sacchari SP1",
    "title": "Kosakonia sacchari SP1",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Zhejiang University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000300455.3",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02472168",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1235834",
        "species_taxid": "1158459",
        "organism_name": "Kosakonia sacchari SP1",
        "infraspecific_name": "strain=SP1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/07/11",
        "asm_name": "ASM30045v4",
        "asm_submitter": "Zhejiang University",
        "gbrs_paired_asm": "GCA_000300455.4",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/300/455/GCF_000300455.3_ASM30045v4",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4902027",
        "genome_size_ungapped": "4902027",
        "gc_percent": "53.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000300455.3-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "4689",
        "protein_coding_gene_count": "4517",
        "non_coding_gene_count": "116",
        "pubmed_id": "23209221"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-07-11",
    "dateModified": "2016-07-11",
    "datePublished": "2016-07-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Kosakonia sacchari SP1"
        ],
        "sample_taxid": [
            "1235834"
        ],
        "sample_host_organism": [
            "sugarcane"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Zhejiang"
        ],
        "sample_host_location_id": [],
        "data_size": "1.385 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.48,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4902027",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4902027",
        "N50 (bp)": "4902027",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "53.7",
        "Number of CDSs": "4549",
        "Average Protein Length": "314.9",
        "Coding Ratio (%)": "87.7",
        "Number of rRNAs": "22",
        "Number of tRNAs": "83",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Kosakonia sacchari",
                "strain": "strain=SP1",
                "accession": "GCA_000300455.4",
                "taxid": 1158459,
                "species_taxid": 1158459,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1633,
                "total_fragments": 1634,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Kosakonia sacchari",
                "strain": "strain=CGMCC 1.12102",
                "accession": "GCA_900100995.1",
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                "species_taxid": 1158459,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9747,
                "matched_fragments": 1604,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Kosakonia pseudosacchari",
                "strain": "strain=JM-387",
                "accession": "GCA_900184035.1",
                "taxid": 1646340,
                "species_taxid": 1646340,
                "relation_to_type": "type",
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                "ani": 94.8645,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "accession": "GCA_004331415.1",
                "taxid": 2529380,
                "species_taxid": 2529380,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.2101,
                "matched_fragments": 1496,
                "total_fragments": 1634,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kosakonia oryzae",
                "strain": "strain=Ola 51",
                "accession": "GCA_001658025.2",
                "taxid": 497725,
                "species_taxid": 497725,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.2004,
                "matched_fragments": 1272,
                "total_fragments": 1634,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kosakonia oryzendophytica",
                "strain": "strain=REICA_082",
                "accession": "GCA_900094925.1",
                "taxid": 1005665,
                "species_taxid": 1005665,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.2784,
                "matched_fragments": 1215,
                "total_fragments": 1634,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kosakonia cowanii",
                "strain": "strain=888-76",
                "accession": "GCA_001975225.1",
                "taxid": 208223,
                "species_taxid": 208223,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.1471,
                "matched_fragments": 1155,
                "total_fragments": 1634,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter hormaechei",
                "strain": "strain=FDAARGOS 1433",
                "accession": "GCA_019048245.1",
                "taxid": 158836,
                "species_taxid": 158836,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 81.5042,
                "matched_fragments": 902,
                "total_fragments": 1634,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter wuhouensis",
                "strain": "strain=WCHEW120002",
                "accession": "GCA_004331265.1",
                "taxid": 2529381,
                "species_taxid": 2529381,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4689,
                "matched_fragments": 900,
                "total_fragments": 1634,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter roggenkampii",
                "strain": "strain=DSM 16690",
                "accession": "GCA_024390995.1",
                "taxid": 1812935,
                "species_taxid": 1812935,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4132,
                "matched_fragments": 883,
                "total_fragments": 1634,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter sichuanensis",
                "strain": "strain=WCHECL1597",
                "accession": "GCA_025002605.1",
                "taxid": 2071710,
                "species_taxid": 2071710,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.3526,
                "matched_fragments": 886,
                "total_fragments": 1634,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leclercia pneumoniae",
                "strain": "strain=49125",
                "accession": "GCA_018987305.1",
                "taxid": 2815358,
                "species_taxid": 2815358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0968,
                "matched_fragments": 832,
                "total_fragments": 1634,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Raoultella electrica",
                "strain": "strain=DSM 102253",
                "accession": "GCA_006711645.1",
                "taxid": 1259973,
                "species_taxid": 1259973,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.957,
                "matched_fragments": 847,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.48,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_000300455.3",
                "gtdb_species": "s__Kosakonia sacchari",
                "ani": 100.0,
                "matched_fragments": 1633,
                "total_fragments": 1634,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kosakonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.35",
                "min_intra_species_ani": "95.81",
                "mean_intra_species_af": "0.96",
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                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000410515.1",
                "gtdb_species": "s__Kosakonia sp000410515",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kosakonia",
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            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_000814905.1",
                "gtdb_species": "s__Kosakonia sp000814905",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kosakonia",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
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                "num_clustered_genomes": 21,
                "status": "-"
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        ]
    },
    "_bac2feature": {
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        "cell_diameter": -0.222,
        "cell_length": 0.13,
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        "growth_tmp": 29.0,
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        "bacillus_cell_shape": 1.0,
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    },
    "_genome_taxon": [
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        "sacchari",
        "SP1"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}