{ "type": "genome", "identifier": "GCF_000300875.1", "organism": "Galbibacter marinus", "title": "Galbibacter marinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Third Institute of State Oceanic Administration (SOA)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000300875.1", "bioproject": "PRJNA224116", "biosample": "SAMN02471163", "wgs_master": "AMSG00000000.1", "refseq_category": "reference genome", "taxid": "555500", "species_taxid": "555500", "organism_name": "Galbibacter marinus", "infraspecific_name": "strain=ck-I2-15", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/10/02", "asm_name": "ASM30087v1", "asm_submitter": "The Third Institute of State Oceanic Administration (SOA)", "gbrs_paired_asm": "GCA_000300875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/300/875/GCF_000300875.1_ASM30087v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3572447", "genome_size_ungapped": "3572447", "gc_percent": "37.000000", "replicon_count": "0", "scaffold_count": "80", "contig_count": "80", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000300875.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "3178", "protein_coding_gene_count": "3103", "non_coding_gene_count": "45", "pubmed_id": "23209227" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-10-02", "dateModified": "2012-10-02", "datePublished": "2012-10-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Galbibacter marinus" ], "sample_taxid": [ "555500" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Indian Ocean" ], "sample_host_location_id": [], "data_size": "1.017 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3572447", "Number of Sequences": "80", "Longest Sequences (bp)": "398436", "N50 (bp)": "140824", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.0", "Number of CDSs": "3033", "Average Protein Length": "341.5", "Coding Ratio (%)": "87.0", "Number of rRNAs": "2", "Number of tRNAs": "38", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Galbibacter marinus", "strain": "strain=ck-I2-15", "accession": "GCA_000300875.1", "taxid": 555500, "species_taxid": 555500, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olleya aquimaris", "strain": "strain=DSM 24464", "accession": "GCA_003259525.1", "taxid": 639310, "species_taxid": 639310, "relation_to_type": "type", "validated": true, "ani": 77.0029, "matched_fragments": 51, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulophaga omnivescoria", "strain": "strain=W5C", "accession": "GCA_001999725.1", "taxid": 1888890, "species_taxid": 1888890, "relation_to_type": "type", "validated": true, "ani": 76.9079, "matched_fragments": 57, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pustulibacterium marinum", "strain": "strain=CGMCC 1.12333", "accession": "GCA_900116665.1", "taxid": 1224947, "species_taxid": 1224947, "relation_to_type": "type", "validated": true, "ani": 76.904, "matched_fragments": 68, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens luteolus", "strain": "strain=XSD401", "accession": "GCA_021032705.1", "taxid": 2855840, "species_taxid": 2855840, "relation_to_type": "type", "validated": true, "ani": 76.8731, "matched_fragments": 51, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera marina", "strain": "strain=NBU2968", "accession": "GCA_019880635.1", "taxid": 2873265, "species_taxid": 2873265, "relation_to_type": "type", "validated": true, "ani": 76.8706, "matched_fragments": 51, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulophaga lytica", "strain": "strain=DSM 7489", "accession": "GCA_000190595.1", "taxid": 979, "species_taxid": 979, "relation_to_type": "type", "validated": true, "ani": 76.7936, "matched_fragments": 64, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana sedimentorum", "strain": "strain=JCM 19808", 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59600, "relation_to_type": "type", "validated": true, "ani": 76.4977, "matched_fragments": 68, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Patiriisocius marinus", "strain": "strain=NBRC 109484", "accession": "GCA_008974325.1", "taxid": 1397112, "species_taxid": 1397112, "relation_to_type": "type", "validated": true, "ani": 76.3195, "matched_fragments": 50, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000300875.1", "gtdb_species": "s__Galbibacter_B marinus", "ani": 100.0, "matched_fragments": 1149, "total_fragments": 1157, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Galbibacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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