{ "type": "genome", "identifier": "GCF_000300995.1", "organism": "Alcanivorax hongdengensis A-11-3", "title": "Alcanivorax hongdengensis A-11-3", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Third Institute of State Oceanic Administration (SOA)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000300995.1", "bioproject": "PRJNA224116", "biosample": "SAMN02471206", "wgs_master": "AMRJ00000000.1", "refseq_category": "reference genome", "taxid": "1177179", "species_taxid": "519051", "organism_name": "Alcanivorax hongdengensis A-11-3", "infraspecific_name": "strain=A-11-3", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/10/02", "asm_name": "ASM30099v1", "asm_submitter": "The Third Institute of State Oceanic Administration (SOA)", "gbrs_paired_asm": "GCA_000300995.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/300/995/GCF_000300995.1_ASM30099v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3664876", "genome_size_ungapped": "3664876", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "93", "contig_count": "93", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000300995.1-RS_2024_08_20", "annotation_date": "2024-08-20", "total_gene_count": "3498", "protein_coding_gene_count": "3440", "non_coding_gene_count": "48", "pubmed_id": "23209226" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-10-02", "dateModified": "2012-10-02", "datePublished": "2012-10-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Alcanivorax hongdengensis A-11-3" ], "sample_taxid": [ "1177179" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.030 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3664876", "Number of Sequences": "93", "Longest Sequences (bp)": "362581", "N50 (bp)": "107364", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.7", "Number of CDSs": "3427", "Average Protein Length": "318.4", "Coding Ratio (%)": "89.3", "Number of rRNAs": "1", "Number of tRNAs": "40", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alcanivorax hongdengensis", "strain": "strain=A-11-3", "accession": "GCA_000300995.1", "taxid": 519051, "species_taxid": 519051, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1170, "total_fragments": 1175, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Alcanivorax jadensis", "strain": "strain=T9", "accession": "GCA_000756655.1", "taxid": 64988, "species_taxid": 64988, "relation_to_type": "type", "validated": true, "ani": 81.437, "matched_fragments": 729, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax nanhaiticus", "strain": "strain=19-m-6", "accession": "GCA_000756665.1", "taxid": 1177154, "species_taxid": 1177154, "relation_to_type": "type", "validated": true, "ani": 80.7781, "matched_fragments": 584, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax profundi", "strain": "strain=MTEO17", "accession": "GCA_003597125.1", "taxid": 2338368, "species_taxid": 2338368, "relation_to_type": "type", "validated": true, "ani": 80.6329, "matched_fragments": 612, 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"below_threshold" }, { "organism_name": "Alcanivorax gelatiniphagus", "strain": "strain=MEBiC 08158", "accession": "GCA_005938655.1", "taxid": 1194167, "species_taxid": 1194167, "relation_to_type": "type", "validated": true, "ani": 80.2943, "matched_fragments": 579, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax balearicus", "strain": "strain=MACL04", "accession": "GCA_025532145.1", "taxid": 413232, "species_taxid": 413232, "relation_to_type": "type", "validated": true, "ani": 79.2113, "matched_fragments": 447, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax mobilis", "strain": "strain=MT13131", "accession": "GCA_002864685.1", "taxid": 2019569, "species_taxid": 2019569, "relation_to_type": "type", "validated": true, "ani": 79.1522, "matched_fragments": 483, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax 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"GCA_013373935.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 76.7921, "matched_fragments": 179, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000300995.1", "gtdb_species": "s__Alcanivorax hongdengensis", "ani": 100.0, "matched_fragments": 1170, "total_fragments": 1175, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_003862375.1", "gtdb_species": "s__Alcanivorax jadensis_A", "ani": 82.0703, "matched_fragments": 697, "total_fragments": 1175, "gtdb_taxonomy": 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