{ "type": "genome", "identifier": "GCF_000301075.1", "organism": "Bergeyella zoohelcum ATCC 43767", "title": "Bergeyella zoohelcum ATCC 43767", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Broad Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000301075.1", "bioproject": "PRJNA224116", "biosample": "SAMN02463902", "wgs_master": "AGYA00000000.1", "refseq_category": "na", "taxid": "883096", "species_taxid": "1015", "organism_name": "Bergeyella zoohelcum ATCC 43767", "infraspecific_name": "strain=ATCC 43767", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/10/11", "asm_name": "Berg_zooh_ATCC_43767_V1", "asm_submitter": "Broad Institute", "gbrs_paired_asm": "GCA_000301075.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/301/075/GCF_000301075.1_Berg_zooh_ATCC_43767_V1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2332784", "genome_size_ungapped": "2309984", "gc_percent": "36.000000", "replicon_count": "0", "scaffold_count": "7", "contig_count": "43", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000301075.1-RS_2024_12_23", "annotation_date": "2024-12-23", "total_gene_count": "2173", "protein_coding_gene_count": "2076", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-10-11", "dateModified": "2012-10-11", "datePublished": "2012-10-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Bergeyella zoohelcum ATCC 43767" ], "sample_taxid": [ "883096" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not determined" ], "sample_host_location_id": [], "data_size": "0.643 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2332784", "Number of Sequences": "7", "Longest Sequences (bp)": "2280027", "N50 (bp)": "2280027", "Gap Ratio (%)": "0.977373", "GCcontent (%)": "36.1", "Number of CDSs": "2090", "Average Protein Length": "318.4", "Coding Ratio (%)": "85.6", "Number of rRNAs": "6", "Number of tRNAs": "40", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bergeyella zoohelcum", "strain": "strain=ATCC 43767", "accession": "GCA_000301075.1", "taxid": 1015, "species_taxid": 1015, "relation_to_type": "type", "validated": true, "ani": 99.9999, "matched_fragments": 769, 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"organism_name": "Kaistella carnis", "strain": "strain=G0081", "accession": "GCA_003860585.1", "taxid": 1241979, "species_taxid": 1241979, "relation_to_type": "type", "validated": true, "ani": 77.6324, "matched_fragments": 60, "total_fragments": 774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ginsenosidimutans", "strain": "strain=THG 15", "accession": "GCA_024807225.1", "taxid": 687846, "species_taxid": 687846, "relation_to_type": "type", "validated": true, "ani": 77.5572, "matched_fragments": 77, "total_fragments": 774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gleum", "strain": "strain=ATCC 35910", "accession": "GCA_000143785.1", "taxid": 250, "species_taxid": 250, "relation_to_type": "type", "validated": true, "ani": 77.2195, "matched_fragments": 83, "total_fragments": 774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cloacibacterium rupense", "strain": "strain=CGMCC 1.7656", "accession": "GCA_014645495.1", "taxid": 517423, "species_taxid": 517423, "relation_to_type": "type", "validated": true, "ani": 77.1487, "matched_fragments": 88, "total_fragments": 774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amniculibacterium aquaticum", "strain": "strain=KYPW7", "accession": "GCA_003852705.1", "taxid": 2479858, "species_taxid": 2479858, "relation_to_type": "type", "validated": true, "ani": 77.1402, "matched_fragments": 96, "total_fragments": 774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium binzhouense", "strain": "strain=LM2", "accession": "GCA_007474545.1", "taxid": 2593646, "species_taxid": 2593646, "relation_to_type": "type", "validated": true, "ani": 77.079, "matched_fragments": 80, "total_fragments": 774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gwangjuense", "strain": "strain=THG-A18", "accession": "GCA_021311115.1", "taxid": 1069980, "species_taxid": 1069980, "relation_to_type": "type", "validated": true, "ani": 77.0421, "matched_fragments": 84, "total_fragments": 774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium aquaticum subsp. greenlandense", "strain": "strain=UMB34", "accession": "GCA_001507325.1", "taxid": 345663, "species_taxid": 452084, "relation_to_type": "type", "validated": true, "ani": 76.9872, "matched_fragments": 76, "total_fragments": 774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 76.9802, "matched_fragments": 78, "total_fragments": 774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium indologenes", "strain": "strain=NBRC 14944", "accession": "GCA_000520835.1", "taxid": 253, 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"validated": true, "ani": 76.743, "matched_fragments": 83, "total_fragments": 774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium piscium", "strain": "strain=CCUG 51923", "accession": "GCA_003385415.1", "taxid": 333702, "species_taxid": 333702, "relation_to_type": "type", "validated": true, "ani": 76.5583, "matched_fragments": 86, "total_fragments": 774, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000301075.1", "gtdb_species": "s__Bergeyella zoohelcum", "ani": 99.9999, "matched_fragments": 769, "total_fragments": 774, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Bergeyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.89", "min_intra_species_ani": "97.05", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.85", 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"num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003730015.1", "gtdb_species": "s__Epilithonimonas hominis", "ani": 77.6923, "matched_fragments": 66, "total_fragments": 774, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Epilithonimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.55", "min_intra_species_ani": "96.42", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003669035.1", "gtdb_species": "s__Chryseobacterium sp003669035", "ani": 77.6512, "matched_fragments": 64, "total_fragments": 774, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006088815.1", "gtdb_species": "s__Elizabethkingia sp006088815", "ani": 77.5522, "matched_fragments": 75, "total_fragments": 774, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Elizabethkingia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003614945.1", "gtdb_species": "s__Bergeyella_A cardium", "ani": 77.4867, "matched_fragments": 85, "total_fragments": 774, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Bergeyella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.84", "min_intra_species_ani": "98.84", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001403755.1", 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