{ "type": "genome", "identifier": "GCF_000302595.1", "organism": "Pedobacter arcticus A12", "title": "Pedobacter arcticus A12", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Wuhan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000302595.1", "bioproject": "PRJNA224116", "biosample": "SAMN02469613", "wgs_master": "AKZJ00000000.1", "refseq_category": "reference genome", "taxid": "1206103", "species_taxid": "752140", "organism_name": "Pedobacter arcticus A12", "infraspecific_name": "strain=A12", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/10/10", "asm_name": "ASM30259v1", "asm_submitter": "Wuhan University", "gbrs_paired_asm": "GCA_000302595.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/302/595/GCF_000302595.1_ASM30259v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4228921", "genome_size_ungapped": "4228288", "gc_percent": "37.000000", "replicon_count": "0", "scaffold_count": "16", "contig_count": "26", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000302595.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3583", "protein_coding_gene_count": "3512", "non_coding_gene_count": "46", "pubmed_id": "23144423" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-10-10", "dateModified": "2012-10-10", "datePublished": "2012-10-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Pedobacter arcticus A12" ], "sample_taxid": [ "1206103" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Norway: Arctic Region" ], "sample_host_location_id": [], "data_size": "1.187 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4228921", "Number of Sequences": "16", "Longest Sequences (bp)": "1235588", "N50 (bp)": "1024955", "Gap Ratio (%)": "0.014968", "GCcontent (%)": "36.9", "Number of CDSs": "3501", "Average Protein Length": "351.2", "Coding Ratio (%)": "87.2", "Number of rRNAs": "3", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pedobacter arcticus", "strain": "strain=A12", "accession": "GCA_000302595.1", "taxid": 752140, "species_taxid": 752140, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1400, "total_fragments": 1401, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pedobacter cryophilus", "strain": "strain=AR-3-17", "accession": "GCA_005116455.1", "taxid": 2571271, "species_taxid": 2571271, "relation_to_type": "type", "validated": true, "ani": 78.1979, "matched_fragments": 308, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelobium manganitolerans", "strain": "strain=YS-25", "accession": "GCA_003609575.1", "taxid": 1842495, "species_taxid": 1842495, "relation_to_type": "type", "validated": true, "ani": 78.1552, "matched_fragments": 314, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter segetis", "strain": "strain=SD-b", "accession": "GCA_016623585.1", "taxid": 2793069, "species_taxid": 2793069, "relation_to_type": "type", "validated": true, "ani": 77.993, "matched_fragments": 290, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter psychrophilus", "strain": "strain=CCM 8644", "accession": "GCA_001652725.1", "taxid": 1826909, "species_taxid": 1826909, "relation_to_type": "type", "validated": true, "ani": 77.8779, "matched_fragments": 330, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter puniceum", "strain": "strain=HX-22-1", "accession": "GCA_009674685.1", "taxid": 2666136, "species_taxid": 2666136, "relation_to_type": "type", "validated": true, "ani": 77.5679, "matched_fragments": 203, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter glucosidilyticus", "strain": "strain=DSM 23534", "accession": "GCA_000425145.1", "taxid": 1122941, "species_taxid": 1122941, "relation_to_type": "type", "validated": true, "ani": 77.3979, "matched_fragments": 228, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter aquae", "strain": "strain=CJ43", "accession": "GCA_008195825.1", "taxid": 2605747, "species_taxid": 2605747, "relation_to_type": "type", "validated": true, "ani": 77.2876, "matched_fragments": 223, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter chinensis", "strain": "strain=JDX94", "accession": "GCA_003339865.1", "taxid": 2282421, "species_taxid": 2282421, "relation_to_type": "type", "validated": true, "ani": 76.8188, "matched_fragments": 104, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter fastidiosus", "strain": "strain=CCM 8938", "accession": "GCA_014306625.1", "taxid": 2765361, "species_taxid": 2765361, "relation_to_type": "type", "validated": true, "ani": 76.8174, "matched_fragments": 113, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000302595.1", 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Pedobacter", "arcticus", "A12" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }