{
    "type": "genome",
    "identifier": "GCF_000302915.1",
    "organism": "Pseudomonas avellanae BPIC 631",
    "title": "Pseudomonas avellanae BPIC 631",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Toronto Centre for the Analysis of Genome Evolution and Function",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000302915.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02471966",
        "wgs_master": "AKBS00000000.1",
        "refseq_category": "na",
        "taxid": "1154758",
        "species_taxid": "46257",
        "organism_name": "Pseudomonas avellanae BPIC 631",
        "infraspecific_name": "strain=BPIC 631",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2012/10/10",
        "asm_name": "Pav631_1.0",
        "asm_submitter": "University of Toronto Centre for the Analysis of Genome Evolution and Function",
        "gbrs_paired_asm": "GCA_000302915.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/302/915/GCF_000302915.1_Pav631_1.0",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6625623",
        "genome_size_ungapped": "5847426",
        "gc_percent": "58.500000",
        "replicon_count": "0",
        "scaffold_count": "297",
        "contig_count": "1602",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000302915.1-RS_2024_03_21",
        "annotation_date": "2024-03-21",
        "total_gene_count": "5811",
        "protein_coding_gene_count": "5266",
        "non_coding_gene_count": "35",
        "pubmed_id": "22800299"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2012-10-10",
    "dateModified": "2012-10-10",
    "datePublished": "2012-10-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonas avellanae BPIC 631"
        ],
        "sample_taxid": [
            "1154758"
        ],
        "sample_host_organism": [
            "Corylus avellana"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Greece"
        ],
        "sample_host_location_id": [],
        "data_size": "1.689 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
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    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6625623",
        "Number of Sequences": "297",
        "Longest Sequences (bp)": "234505",
        "N50 (bp)": "79231",
        "Gap Ratio (%)": "11.745356",
        "GCcontent (%)": "58.7",
        "Number of CDSs": "5119",
        "Average Protein Length": "301.7",
        "Coding Ratio (%)": "69.9",
        "Number of rRNAs": "2",
        "Number of tRNAs": "30",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Pseudomonas avellanae",
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                "relation_to_type": "type",
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            {
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            },
            {
                "organism_name": "Pseudomonas syringae",
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                "species_taxid": 317,
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                "validated": true,
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                "total_fragments": 2111,
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            {
                "organism_name": "Pseudomonas syringae",
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                "accession": "GCA_000658965.1",
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                "validated": true,
                "ani": 96.9934,
                "matched_fragments": 1729,
                "total_fragments": 2111,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pseudomonas syringae group genomosp. 3",
                "strain": "strain=ICMP529",
                "accession": "GCA_001400335.1",
                "taxid": 251701,
                "species_taxid": 251701,
                "relation_to_type": "pathovar",
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                "ani": 96.674,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pseudomonas syringae group genomosp. 3",
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                "taxid": 251701,
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            {
                "organism_name": "Pseudomonas syringae group genomosp. 3",
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            },
            {
                "organism_name": "Pseudomonas amygdali",
                "strain": "strain=DSM 105780",
                "accession": "GCA_022828345.1",
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            {
                "organism_name": "Pseudomonas syringae group genomosp. 7",
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            {
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            },
            {
                "organism_name": "Pseudomonas faucium",
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                "accession": "GCA_021602585.1",
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            }
        ],
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    "_genome_taxon": [
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        "BPIC",
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}