{ "type": "genome", "identifier": "GCF_000305495.1", "organism": "Peribacillus psychrosaccharolyticus ATCC 23296", "title": "Peribacillus psychrosaccharolyticus ATCC 23296", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Complutense University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000305495.1", "bioproject": "PRJNA224116", "biosample": "SAMN00857837", "wgs_master": "AJTN00000000.2", "refseq_category": "na", "taxid": "1174504", "species_taxid": "1407", "organism_name": "Peribacillus psychrosaccharolyticus ATCC 23296", "infraspecific_name": "strain=ATCC 23296", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/15", "asm_name": "BacPsy2.0", "asm_submitter": "Complutense University", "gbrs_paired_asm": "GCA_000305495.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/305/495/GCF_000305495.1_BacPsy2.0", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4590454", "genome_size_ungapped": "4590454", "gc_percent": "39.000000", "replicon_count": "0", "scaffold_count": "265", "contig_count": "265", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-28", "total_gene_count": "4781", "protein_coding_gene_count": "4427", "non_coding_gene_count": "100", "pubmed_id": "23723405" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-15", "dateModified": "2013-04-15", "datePublished": "2013-04-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Peribacillus psychrosaccharolyticus ATCC 23296" ], "sample_taxid": [ "1174504" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.313 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.63, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4590454", "Number of Sequences": "265", "Longest Sequences (bp)": "147599", "N50 (bp)": "33458", "Gap Ratio (%)": "0.000087", "GCcontent (%)": "38.8", "Number of CDSs": "4638", "Average Protein Length": "267.5", "Coding Ratio (%)": "81.1", "Number of rRNAs": "7", "Number of tRNAs": "86", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Peribacillus psychrosaccharolyticus", "strain": "strain=ATCC 23296", "accession": "GCA_000305495.2", "taxid": 1407, "species_taxid": 1407, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1397, "total_fragments": 1412, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Peribacillus frigoritolerans", "strain": "strain=DSM 8801", "accession": "GCA_024169475.1", "taxid": 450367, "species_taxid": 450367, "relation_to_type": "type", "validated": true, "ani": 78.088, "matched_fragments": 168, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus massiliglaciei", "strain": "strain=Marseille-P2600", "accession": "GCA_900098925.1", "taxid": 1816693, "species_taxid": 1816693, "relation_to_type": "type", "validated": true, "ani": 77.9433, "matched_fragments": 139, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peribacillus loiseleuriae", "strain": "strain=FJAT-27997", "accession": "GCA_001183985.1", "taxid": 1679170, "species_taxid": 1679170, "relation_to_type": "type", "validated": true, "ani": 77.894, "matched_fragments": 191, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peribacillus frigoritolerans", "strain": "strain=FJAT-2396", "accession": "GCA_001636405.1", "taxid": 450367, "species_taxid": 450367, "relation_to_type": "type", "validated": true, "ani": 77.8768, "matched_fragments": 187, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peribacillus butanolivorans", "strain": "strain=DSM 18926", "accession": "GCA_001273755.1", "taxid": 421767, "species_taxid": 421767, "relation_to_type": "type", "validated": true, "ani": 77.8306, "matched_fragments": 227, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peribacillus simplex", "strain": "strain=DSM 1321", "accession": "GCA_002243645.1", "taxid": 1478, "species_taxid": 1478, "relation_to_type": "suspected-type", "validated": true, "ani": 77.8045, "matched_fragments": 198, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peribacillus asahii", "strain": "strain=MA001", "accession": "GCA_003570725.1", "taxid": 228899, "species_taxid": 228899, "relation_to_type": "suspected-type", "validated": true, "ani": 77.7929, "matched_fragments": 158, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peribacillus simplex", "strain": "strain=NBRC 15720", "accession": "GCA_001591785.1", "taxid": 1478, "species_taxid": 1478, "relation_to_type": "suspected-type", "validated": true, "ani": 77.5925, "matched_fragments": 192, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus bambusae", "strain": "strain=BG109", "accession": "GCA_017497975.1", "taxid": 2795218, "species_taxid": 2795218, "relation_to_type": "type", "validated": true, "ani": 77.4954, "matched_fragments": 100, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus cucumis", "strain": "strain=DSM 101566", "accession": "GCA_016908975.1", "taxid": 1740721, "species_taxid": 1740721, "relation_to_type": "type", "validated": true, "ani": 77.4722, "matched_fragments": 98, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peribacillus saganii", "strain": "strain=V47-23a", "accession": "GCA_003429095.1", "taxid": 2303992, "species_taxid": 2303992, "relation_to_type": "type", "validated": true, "ani": 77.4247, "matched_fragments": 119, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peribacillus acanthi", "strain": "strain=L28", "accession": "GCA_003073175.1", "taxid": 2171554, "species_taxid": 2171554, "relation_to_type": "type", "validated": true, "ani": 77.1422, "matched_fragments": 109, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Priestia megaterium", "strain": "strain=NCTC10342", "accession": "GCA_900445485.1", "taxid": 1404, "species_taxid": 1404, "relation_to_type": "type", "validated": true, "ani": 77.1151, "matched_fragments": 93, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus tepidiphilus", "strain": "strain=SYSU G01002", "accession": "GCA_009466385.1", "taxid": 2652445, "species_taxid": 2652445, "relation_to_type": "type", "validated": true, "ani": 77.0368, "matched_fragments": 94, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cytobacillus stercorigallinarum", "strain": "strain=Sa5YUA1", "accession": "GCA_014836495.1", "taxid": 2762240, "species_taxid": 2762240, "relation_to_type": "type", "validated": true, "ani": 77.0053, "matched_fragments": 75, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Priestia megaterium", "strain": "strain=NBRC 15308", "accession": "GCA_001591525.1", "taxid": 1404, "species_taxid": 1404, "relation_to_type": "type", "validated": true, "ani": 76.956, "matched_fragments": 92, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Heyndrickxia vini", "strain": "strain=JCM 19841", "accession": "GCA_016772275.1", "taxid": 1476025, "species_taxid": 1476025, "relation_to_type": "type", "validated": true, "ani": 76.7065, "matched_fragments": 76, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus safensis", "strain": "strain=FO-36b", "accession": "GCA_003097715.1", "taxid": 561879, "species_taxid": 561879, "relation_to_type": "type", "validated": true, "ani": 76.6185, "matched_fragments": 51, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Falsibacillus albus", "strain": "strain=GY 10110", "accession": "GCA_003668575.1", "taxid": 2478915, "species_taxid": 2478915, "relation_to_type": "type", "validated": true, "ani": 76.5702, "matched_fragments": 57, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus fastidiosus", "strain": "strain=NBRC 101226", "accession": "GCA_001591625.1", "taxid": 1458, "species_taxid": 1458, "relation_to_type": "type", "validated": true, "ani": 76.3469, "matched_fragments": 78, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.63, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000305495.1", "gtdb_species": "s__Peribacillus psychrosaccharolyticus", "ani": 100.0, "matched_fragments": 1398, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-1321;g__Peribacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_001542915.1", "gtdb_species": "s__Peribacillus simplex_B", "ani": 78.2531, "matched_fragments": 157, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-1321;g__Peribacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.35", "min_intra_species_ani": "97.35", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002835675.1", "gtdb_species": "s__Peribacillus sp002835675", "ani": 78.1786, "matched_fragments": 188, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-1321;g__Peribacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.47", "min_intra_species_ani": "96.35", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900098925.1", "gtdb_species": "s__Peribacillus massiliglaciei", "ani": 77.9433, "matched_fragments": 139, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-1321;g__Peribacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004006295.1", "gtdb_species": "s__Peribacillus asahii_A", "ani": 77.9295, "matched_fragments": 167, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-1321;g__Peribacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001636405.1", "gtdb_species": "s__Peribacillus frigoritolerans", "ani": 77.9141, "matched_fragments": 185, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-1321;g__Peribacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.03", "min_intra_species_ani": "95.65", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.82", "num_clustered_genomes": 39, "status": "-" }, { "accession": "GCF_900112495.1", "gtdb_species": "s__Peribacillus sp900112495", "ani": 77.8728, "matched_fragments": 174, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-1321;g__Peribacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.26", "min_intra_species_ani": "95.26", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001645685.2", "gtdb_species": "s__Peribacillus muralis_A", "ani": 77.8631, "matched_fragments": 159, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-1321;g__Peribacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001273755.1", "gtdb_species": "s__Peribacillus butanolivorans", "ani": 77.8306, "matched_fragments": 227, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-1321;g__Peribacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.70", "min_intra_species_ani": "97.35", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.86", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_002243645.1", "gtdb_species": "s__Peribacillus simplex", "ani": 77.8096, "matched_fragments": 197, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-1321;g__Peribacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.44", "min_intra_species_ani": "98.94", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_003570725.1", "gtdb_species": "s__Peribacillus asahii", "ani": 77.7929, "matched_fragments": 158, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-1321;g__Peribacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014138605.1", "gtdb_species": "s__Peribacillus huizhouensis", "ani": 77.7853, "matched_fragments": 198, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-1321;g__Peribacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.72", "min_intra_species_ani": "98.72", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002860285.1", "gtdb_species": "s__Peribacillus_A sp002860285", "ani": 77.4894, "matched_fragments": 127, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-1321;g__Peribacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017355165.1", "gtdb_species": "s__Peribacillus sp017355165", "ani": 77.4336, "matched_fragments": 177, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-1321;g__Peribacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002019635.1", "gtdb_species": "s__Metabacillus halosaccharovorans", "ani": 77.1686, "matched_fragments": 90, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Metabacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.47", "min_intra_species_ani": "95.47", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900177675.1", "gtdb_species": "s__Neobacillus sp900177675", "ani": 77.0873, "matched_fragments": 103, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.52", "min_intra_species_ani": "98.52", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002871465.1", "gtdb_species": "s__Metabacillus sp002871465", "ani": 76.9858, "matched_fragments": 76, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Metabacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.74", "min_intra_species_ani": "98.74", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003053645.1", "gtdb_species": "s__Gottfriedia sp003053645", "ani": 76.8882, "matched_fragments": 73, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Gottfriedia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000482325.1", "gtdb_species": "s__Neobacillus sp000482325", "ani": 76.8177, "matched_fragments": 89, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003668575.1", "gtdb_species": "s__Falsibacillus albus", "ani": 76.6441, "matched_fragments": 55, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-25281;g__Falsibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_019039215.1", "gtdb_species": "s__Cytobacillus sp019039215", "ani": 76.6437, "matched_fragments": 86, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000307875.1", "gtdb_species": "s__Neobacillus bataviensis", "ani": 76.5409, "matched_fragments": 93, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Peribacillus", "psychrosaccharolyticus", "ATCC", "23296" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }