{ "type": "genome", "identifier": "GCF_000306945.1", "organism": "Bordetella pertussis 18323", "title": "Bordetella pertussis 18323", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WTSI", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000306945.1", "bioproject": "PRJNA224116", "biosample": "SAMEA2272749", "wgs_master": "na", "refseq_category": "na", "taxid": "568706", "species_taxid": "520", "organism_name": "Bordetella pertussis 18323", "infraspecific_name": "strain=18323", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/08/20", "asm_name": "ASM30694v1", "asm_submitter": "WTSI", "gbrs_paired_asm": "GCA_000306945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/306/945/GCF_000306945.1_ASM30694v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4043846", "genome_size_ungapped": "4043846", "gc_percent": "67.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-11", "total_gene_count": "3918", "protein_coding_gene_count": "3578", "non_coding_gene_count": "64", "pubmed_id": "23051057" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-08-20", "dateModified": "2012-08-20", "datePublished": "2012-08-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Bordetella pertussis 18323" ], "sample_taxid": [ "568706" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.073 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4043846", "Number of Sequences": "1", "Longest Sequences (bp)": "4043846", "N50 (bp)": "4043846", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.7", "Number of CDSs": "3887", "Average Protein Length": "313.5", "Coding Ratio (%)": "90.4", "Number of rRNAs": "9", "Number of tRNAs": "64", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bordetella pertussis", "strain": "strain=18323", "accession": "GCA_000306945.1", "taxid": 520, "species_taxid": 520, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1344, "total_fragments": 1347, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Bordetella pertussis", "strain": "strain=FDAARGOS_1543", "accession": "GCA_020736265.1", "taxid": 520, "species_taxid": 520, "relation_to_type": "type", "validated": true, "ani": 99.994, "matched_fragments": 1344, "total_fragments": 1347, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Bordetella parapertussis", "strain": "strain=NCTC5952", "accession": "GCA_900445785.1", "taxid": 519, "species_taxid": 519, "relation_to_type": "suspected-type", "validated": true, "ani": 98.3575, "matched_fragments": 1201, "total_fragments": 1347, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Bordetella parapertussis", "strain": "strain=FDAARGOS_1541", "accession": "GCA_020735925.1", "taxid": 519, "species_taxid": 519, "relation_to_type": "suspected-type", "validated": true, "ani": 98.3143, "matched_fragments": 1213, "total_fragments": 1347, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Bordetella parapertussis", "strain": "strain=FDAARGOS_177", "accession": "GCA_001525545.2", "taxid": 519, "species_taxid": 519, "relation_to_type": "suspected-type", "validated": true, "ani": 98.2793, "matched_fragments": 1228, "total_fragments": 1347, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Bordetella bronchiseptica", "strain": "strain=NCTC452", "accession": "GCA_900445725.1", "taxid": 518, "species_taxid": 518, "relation_to_type": "suspected-type", "validated": true, "ani": 98.0933, "matched_fragments": 1232, "total_fragments": 1347, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Bordetella bronchiseptica", "strain": "strain=NBRC 13691", "accession": "GCA_001598655.1", "taxid": 518, "species_taxid": 518, "relation_to_type": "suspected-type", "validated": true, "ani": 98.0504, "matched_fragments": 1163, "total_fragments": 1347, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Bordetella bronchiseptica", "strain": "strain=CCUG 219", "accession": 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