{ "type": "genome", "identifier": "GCF_000306965.1", "organism": "Amphibacillus jilinensis Y1", "title": "Amphibacillus jilinensis Y1", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000306965.1", "bioproject": "PRJNA224116", "biosample": "SAMN02472174", "wgs_master": "AMWI00000000.1", "refseq_category": "reference genome", "taxid": "562743", "species_taxid": "1216008", "organism_name": "Amphibacillus jilinensis Y1", "infraspecific_name": "strain=Y1", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/10/19", "asm_name": "ASM30696v1", "asm_submitter": "Zhejiang University", "gbrs_paired_asm": "GCA_000306965.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/306/965/GCF_000306965.1_ASM30696v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3836603", "genome_size_ungapped": "3831075", "gc_percent": "37.500000", "replicon_count": "0", "scaffold_count": "30", "contig_count": "83", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000306965.1-RS_2024_03_31", "annotation_date": "2024-03-31", "total_gene_count": "3642", "protein_coding_gene_count": "3523", "non_coding_gene_count": "61", "pubmed_id": "19965990" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-10-19", "dateModified": "2012-10-19", "datePublished": "2012-10-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Amphibacillus jilinensis Y1" ], "sample_taxid": [ "562743" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Jilin Province" ], "sample_host_location_id": [], "data_size": "1.084 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3836603", "Number of Sequences": "30", "Longest Sequences (bp)": "1374356", "N50 (bp)": "676113", "Gap Ratio (%)": "0.144086", "GCcontent (%)": "37.3", "Number of CDSs": "3613", "Average Protein Length": "293.4", "Coding Ratio (%)": "82.9", "Number of rRNAs": "3", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Amphibacillus jilinensis", "strain": "strain=Y1", "accession": "GCA_000306965.1", "taxid": 1216008, "species_taxid": 1216008, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1264, "total_fragments": 1265, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Amphibacillus cookii", "strain": "strain=DSM 23721", "accession": "GCA_016908375.1", "taxid": 767787, "species_taxid": 767787, "relation_to_type": "type", "validated": true, "ani": 91.2421, "matched_fragments": 1049, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amphibacillus marinus", "strain": "strain=CGMCC 1.10434", "accession": "GCA_900110345.1", "taxid": 872970, "species_taxid": 872970, "relation_to_type": "type", "validated": true, "ani": 77.7682, "matched_fragments": 206, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptohalobacillus salinus", "strain": "strain=DSM 22440", "accession": "GCA_003201605.1", "taxid": 621096, "species_taxid": 621096, "relation_to_type": "type", "validated": true, "ani": 77.7232, "matched_fragments": 114, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amphibacillus sediminis", "strain": "strain=NBRC 103570", "accession": "GCA_001552275.1", "taxid": 360185, "species_taxid": 360185, "relation_to_type": "type", "validated": true, "ani": 77.6719, "matched_fragments": 221, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halolactibacillus alkaliphilus", "strain": "strain=CGMCC 1.6843", "accession": "GCA_014645215.1", "taxid": 442899, "species_taxid": 442899, "relation_to_type": "type", "validated": true, "ani": 77.5963, "matched_fragments": 99, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halolactibacillus alkaliphilus", "strain": "strain=NBRC 103919", "accession": "GCA_007991355.1", "taxid": 442899, "species_taxid": 442899, "relation_to_type": "type", "validated": true, "ani": 77.5352, "matched_fragments": 100, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraliobacillus zengyii", "strain": "strain=X-1125", "accession": "GCA_003268595.1", "taxid": 2213194, "species_taxid": 2213194, "relation_to_type": "type", "validated": true, "ani": 77.4383, "matched_fragments": 110, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraliobacillus ryukyuensis", "strain": "strain=DSM 15140", "accession": "GCA_003315295.1", "taxid": 200904, "species_taxid": 200904, "relation_to_type": "type", "validated": true, "ani": 77.2199, "matched_fragments": 115, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amphibacillus xylanus", "strain": "strain=NBRC 15112", "accession": "GCA_000307165.1", "taxid": 1449, "species_taxid": 1449, "relation_to_type": "type", "validated": true, "ani": 77.0629, "matched_fragments": 117, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinibacillus contaminans", "strain": "strain=DSM 22953", "accession": "GCA_001038425.2", "taxid": 694055, "species_taxid": 694055, "relation_to_type": "type", "validated": true, "ani": 76.9727, "matched_fragments": 51, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibacillus saliphilus", "strain": "strain=KHM2", "accession": "GCA_020404745.1", "taxid": 1909422, "species_taxid": 1909422, "relation_to_type": "type", "validated": true, "ani": 76.9303, "matched_fragments": 65, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibacillus albus", "strain": "strain=DSM 23711", "accession": "GCA_016908325.1", "taxid": 1168171, "species_taxid": 1168171, "relation_to_type": "type", "validated": true, "ani": 76.8627, "matched_fragments": 70, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibacillus kalidii", "strain": "strain=HU2P27", "accession": "GCA_014280935.1", "taxid": 2762597, "species_taxid": 2762597, "relation_to_type": "type", "validated": true, "ani": 76.8298, "matched_fragments": 70, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gracilibacillus orientalis", "strain": "strain=CGMCC 1.4250", "accession": "GCA_900114645.1", "taxid": 334253, "species_taxid": 334253, "relation_to_type": "type", "validated": true, "ani": 76.7617, "matched_fragments": 73, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraliobacillus sediminis", "strain": "strain=126C4", "accession": "GCA_003426055.1", "taxid": 1885916, "species_taxid": 1885916, "relation_to_type": "type", "validated": true, "ani": 76.1639, "matched_fragments": 103, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000306965.1", "gtdb_species": "s__Amphibacillus_C jilinensis", "ani": 100.0, "matched_fragments": 1264, "total_fragments": 1265, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Amphibacillus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_016908375.1", "gtdb_species": "s__Amphibacillus_C cookii", "ani": 91.2421, "matched_fragments": 1049, "total_fragments": 1265, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Amphibacillus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900110345.1", "gtdb_species": "s__Amphibacillus_D marinus", "ani": 77.7796, 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Amphibacillus", "jilinensis", "Y1" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }