{
    "type": "genome",
    "identifier": "GCF_000308295.2",
    "organism": "Afipia birgiae 34632",
    "title": "Afipia birgiae 34632",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "ebi",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000308295.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA2272295",
        "wgs_master": "CAJQ00000000.2",
        "refseq_category": "reference genome",
        "taxid": "1197906",
        "species_taxid": "151414",
        "organism_name": "Afipia birgiae 34632",
        "infraspecific_name": "strain=34632",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/02/26",
        "asm_name": "Ab_34632",
        "asm_submitter": "ebi",
        "gbrs_paired_asm": "GCA_000308295.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/308/295/GCF_000308295.2_Ab_34632",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5334146",
        "genome_size_ungapped": "5302466",
        "gc_percent": "61.000000",
        "replicon_count": "0",
        "scaffold_count": "5",
        "contig_count": "65",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000308295.2-RS_2024_05_26",
        "annotation_date": "2024-05-26",
        "total_gene_count": "5172",
        "protein_coding_gene_count": "4925",
        "non_coding_gene_count": "60",
        "pubmed_id": "23209256"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-02-26",
    "dateModified": "2014-02-26",
    "datePublished": "2014-02-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Afipia birgiae 34632"
        ],
        "sample_taxid": [
            "1197906"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.486 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5334146",
        "Number of Sequences": "5",
        "Longest Sequences (bp)": "2944842",
        "N50 (bp)": "2944842",
        "Gap Ratio (%)": "0.594303",
        "GCcontent (%)": "60.8",
        "Number of CDSs": "5098",
        "Average Protein Length": "297.5",
        "Coding Ratio (%)": "85.3",
        "Number of rRNAs": "3",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "relation_to_type": "type",
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            {
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            },
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                "accession": "GCA_000314735.2",
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                "ani_threshold": 95,
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            },
            {
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                "accession": "GCA_023278185.1",
                "taxid": 29448,
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                "status": "below_threshold"
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            {
                "organism_name": "Afipia carboxidovorans",
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            {
                "organism_name": "Bradyrhizobium viridifuturi",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
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                "status": "below_threshold"
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                "organism_name": "Bradyrhizobium altum",
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            {
                "organism_name": "Bradyrhizobium jicamae",
                "strain": "strain=PAC68",
                "accession": "GCA_001440395.1",
                "taxid": 280332,
                "species_taxid": 280332,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bradyrhizobium murdochi",
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                "accession": "GCA_000472965.1",
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                "status": "below_threshold"
            },
            {
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                "mean_intra_species_ani": "N/A",
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}