{
    "type": "genome",
    "identifier": "GCF_000308535.1",
    "organism": "Nocardia cerradoensis NBRC 101014",
    "title": "Nocardia cerradoensis NBRC 101014",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Technology and Evaluation",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000308535.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00041789",
        "wgs_master": "BAFW00000000.1",
        "refseq_category": "na",
        "taxid": "1206727",
        "species_taxid": "85688",
        "organism_name": "Nocardia cerradoensis NBRC 101014",
        "infraspecific_name": "strain=NBRC 101014",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2012/07/13",
        "asm_name": "ASM30853v1",
        "asm_submitter": "National Institute of Technology and Evaluation",
        "gbrs_paired_asm": "GCA_000308535.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/308/535/GCF_000308535.1_ASM30853v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7602329",
        "genome_size_ungapped": "7602329",
        "gc_percent": "68.000000",
        "replicon_count": "0",
        "scaffold_count": "388",
        "contig_count": "388",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000308535.1-RS_2024_09_02",
        "annotation_date": "2024-09-02",
        "total_gene_count": "7214",
        "protein_coding_gene_count": "6966",
        "non_coding_gene_count": "58",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2012-07-13",
    "dateModified": "2012-07-13",
    "datePublished": "2012-07-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nocardia cerradoensis NBRC 101014"
        ],
        "sample_taxid": [
            "1206727"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "2.079 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 2.31,
        "strain_heterogeneity": 40.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7600729",
        "Number of Sequences": "376",
        "Longest Sequences (bp)": "164388",
        "N50 (bp)": "37646",
        "Gap Ratio (%)": "0.000026",
        "GCcontent (%)": "68.2",
        "Number of CDSs": "6739",
        "Average Protein Length": "306.2",
        "Coding Ratio (%)": "81.5",
        "Number of rRNAs": "1",
        "Number of tRNAs": "61",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Nocardia cerradoensis",
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                "species_taxid": 85688,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 2354,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Nocardia aobensis",
                "strain": "strain=NBRC 100429",
                "accession": "GCA_000308375.1",
                "taxid": 257277,
                "species_taxid": 257277,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.0126,
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                "status": "inconclusive"
            },
            {
                "organism_name": "Nocardia kruczakiae",
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                "species_taxid": 261477,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "species_taxid": 508464,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1984,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia africana",
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                "accession": "GCA_001612635.1",
                "taxid": 134964,
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1916,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia africana",
                "strain": "strain=FDAARGOS_1597",
                "accession": "GCA_020731565.1",
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                "species_taxid": 134964,
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                "validated": true,
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                "matched_fragments": 1929,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia elegans",
                "strain": "strain=NBRC 108235",
                "accession": "GCA_001612845.1",
                "taxid": 300029,
                "species_taxid": 300029,
                "relation_to_type": "type",
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                "total_fragments": 2354,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia nova",
                "strain": "strain=NBRC 15556",
                "accession": "GCA_001613005.1",
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                "species_taxid": 37330,
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                "validated": true,
                "ani": 92.2152,
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                "status": "below_threshold"
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        ],
        "cc_result": {
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            "contamination": 2.31,
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        "gtdb_result": [
            {
                "accession": "GCF_000308535.1",
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                "ani": 100.0,
                "matched_fragments": 2338,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia",
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            },
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                "num_clustered_genomes": 3,
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            },
            {
                "accession": "GCF_015354405.1",
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                "matched_fragments": 1942,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
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            {
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        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": 0.0,
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    },
    "_genome_taxon": [
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        "cerradoensis",
        "NBRC",
        "101014"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}