{
    "type": "genome",
    "identifier": "GCF_000308555.1",
    "organism": "Nocardia cyriacigeorgica NBRC 100375",
    "title": "Nocardia cyriacigeorgica NBRC 100375",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Technology and Evaluation",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000308555.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00041775",
        "wgs_master": "BAFY00000000.1",
        "refseq_category": "na",
        "taxid": "1206728",
        "species_taxid": "135487",
        "organism_name": "Nocardia cyriacigeorgica NBRC 100375",
        "infraspecific_name": "strain=NBRC 100375",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2012/07/13",
        "asm_name": "ASM30855v1",
        "asm_submitter": "National Institute of Technology and Evaluation",
        "gbrs_paired_asm": "GCA_000308555.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/308/555/GCF_000308555.1_ASM30855v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6311306",
        "genome_size_ungapped": "6311306",
        "gc_percent": "68.000000",
        "replicon_count": "0",
        "scaffold_count": "328",
        "contig_count": "328",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000308555.1-RS_2024_09_03",
        "annotation_date": "2024-09-03",
        "total_gene_count": "5917",
        "protein_coding_gene_count": "5666",
        "non_coding_gene_count": "60",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2012-07-13",
    "dateModified": "2012-07-13",
    "datePublished": "2012-07-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nocardia cyriacigeorgica NBRC 100375"
        ],
        "sample_taxid": [
            "1206728"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.727 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 2.08,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6309561",
        "Number of Sequences": "316",
        "Longest Sequences (bp)": "144374",
        "N50 (bp)": "34812",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "68.2",
        "Number of CDSs": "5588",
        "Average Protein Length": "308.5",
        "Coding Ratio (%)": "82.0",
        "Number of rRNAs": "3",
        "Number of tRNAs": "59",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Nocardia cyriacigeorgica",
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            },
            {
                "organism_name": "Nocardia cyriacigeorgica",
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                "status": "conclusive"
            },
            {
                "organism_name": "Nocardia bhagyanarayanae",
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                "accession": "GCA_006716565.1",
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                "ani_threshold": 95,
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            },
            {
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia amikacinitolerans",
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                "matched_fragments": 1150,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia xishanensis",
                "strain": "strain=NBRC 101358",
                "accession": "GCA_001613365.1",
                "taxid": 238964,
                "species_taxid": 238964,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia amikacinitolerans",
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            },
            {
                "organism_name": "Nocardia asteroides",
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                "accession": "GCA_005863255.1",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia neocaledoniensis",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
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            },
            {
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                "organism_name": "Nocardia suismassiliense",
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                "organism_name": "Nocardia thailandica",
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                "species_taxid": 257275,
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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        "cyriacigeorgica",
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    "quality": 4,
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}