{ "type": "genome", "identifier": "GCF_000308635.1", "organism": "Nocardia otitidiscaviarum NBRC 14405", "title": "Nocardia otitidiscaviarum NBRC 14405", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000308635.1", "bioproject": "PRJNA224116", "biosample": "SAMD00041819", "wgs_master": "BAGD00000000.1", "refseq_category": "na", "taxid": "1206732", "species_taxid": "1823", "organism_name": "Nocardia otitidiscaviarum NBRC 14405", "infraspecific_name": "strain=NBRC 14405", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/07/16", "asm_name": "ASM30863v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_000308635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/308/635/GCF_000308635.1_ASM30863v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7482555", "genome_size_ungapped": "7482555", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "281", "contig_count": "281", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000308635.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "6990", "protein_coding_gene_count": "6755", "non_coding_gene_count": "80", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-07-16", "dateModified": "2012-07-16", "datePublished": "2012-07-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardia otitidiscaviarum NBRC 14405" ], "sample_taxid": [ "1206732" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "2.040 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 3.7, "strain_heterogeneity": 14.29, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7475430", "Number of Sequences": "225", "Longest Sequences (bp)": "307308", "N50 (bp)": "86449", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.0", "Number of CDSs": "6791", "Average Protein Length": "314.3", "Coding Ratio (%)": "85.6", "Number of rRNAs": "4", "Number of tRNAs": "84", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardia otitidiscaviarum", "strain": "strain=NBRC 14405", "accession": "GCA_000308635.1", "taxid": 1823, "species_taxid": 1823, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia yamanashiensis", "strain": "strain=NBRC 100130", "accession": "GCA_001613325.1", "taxid": 209247, "species_taxid": 209247, "relation_to_type": "type", "validated": true, "ani": 82.2737, "matched_fragments": 1472, "total_fragments": 2411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia niigatensis", "strain": "strain=NBRC 100131", "accession": "GCA_000308655.1", "taxid": 209249, "species_taxid": 209249, "relation_to_type": "type", "validated": true, "ani": 82.2098, "matched_fragments": 1319, "total_fragments": 2411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia yunnanensis", "strain": "strain=CFH S0054", "accession": "GCA_003626895.1", "taxid": 2382165, "species_taxid": 2382165, "relation_to_type": "type", "validated": true, "ani": 82.0934, "matched_fragments": 1424, "total_fragments": 2411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia farcinica", "strain": "strain=DSM 43257", "accession": "GCA_900156775.1", "taxid": 37329, "species_taxid": 37329, "relation_to_type": "type", "validated": true, "ani": 80.5633, "matched_fragments": 1058, "total_fragments": 2411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia lijiangensis", "strain": "strain=NBRC 108240", "accession": "GCA_001613045.1", "taxid": 299618, "species_taxid": 299618, "relation_to_type": "type", "validated": true, "ani": 80.2865, "matched_fragments": 1160, "total_fragments": 2411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia bhagyanarayanae", "strain": "strain=DSM 103495", "accession": "GCA_006716565.1", "taxid": 1215925, "species_taxid": 1215925, "relation_to_type": "type", "validated": true, "ani": 80.2512, "matched_fragments": 1180, "total_fragments": 2411, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, 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