{ "type": "genome", "identifier": "GCF_000308695.1", "organism": "Nocardia takedensis NBRC 100417", "title": "Nocardia takedensis NBRC 100417", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000308695.1", "bioproject": "PRJNA224116", "biosample": "SAMD00041777", "wgs_master": "BAGG00000000.1", "refseq_category": "reference genome", "taxid": "1206735", "species_taxid": "259390", "organism_name": "Nocardia takedensis NBRC 100417", "infraspecific_name": "strain=NBRC 100417", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/07/16", "asm_name": "ASM30869v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_000308695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/308/695/GCF_000308695.1_ASM30869v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8033873", "genome_size_ungapped": "8033873", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "266", "contig_count": "266", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000308695.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "7324", "protein_coding_gene_count": "7093", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-07-16", "dateModified": "2012-07-16", "datePublished": "2012-07-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardia takedensis NBRC 100417" ], "sample_taxid": [ "1206735" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "2.173 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8028496", "Number of Sequences": "227", "Longest Sequences (bp)": "379680", "N50 (bp)": "96425", "Gap Ratio (%)": "0.000012", "GCcontent (%)": "69.5", "Number of CDSs": "7117", "Average Protein Length": "322.6", "Coding Ratio (%)": "85.8", "Number of rRNAs": "3", "Number of tRNAs": "67", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardia takedensis", "strain": "strain=NBRC 100417", "accession": "GCA_000308695.1", "taxid": 259390, "species_taxid": 259390, 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}, { "organism_name": "Nocardia amikacinitolerans", "strain": "strain=NBRC 108937", "accession": "GCA_001612615.1", "taxid": 756689, "species_taxid": 756689, "relation_to_type": "type", "validated": true, "ani": 82.078, "matched_fragments": 1285, "total_fragments": 2574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia puris", "strain": "strain=DSM 44599", "accession": "GCA_003315035.1", "taxid": 208602, "species_taxid": 208602, "relation_to_type": "type", "validated": true, "ani": 82.0298, "matched_fragments": 1295, "total_fragments": 2574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia lijiangensis", "strain": "strain=NBRC 108240", "accession": "GCA_001613045.1", "taxid": 299618, "species_taxid": 299618, "relation_to_type": "type", "validated": true, "ani": 81.9844, "matched_fragments": 1259, "total_fragments": 2574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia xishanensis", 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