{ "type": "genome", "identifier": "GCF_000312345.1", "organism": "Corynebacterium timonense 5401744", "title": "Corynebacterium timonense 5401744", "description": "na", "data type": "Genome sequencing and assembly", "organization": "ebi", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000312345.1", "bioproject": "PRJNA224116", "biosample": "SAMEA2271986", "wgs_master": "CAJP00000000.1", "refseq_category": "reference genome", "taxid": "1203190", "species_taxid": "441500", "organism_name": "Corynebacterium timonense 5401744", "infraspecific_name": "strain=5401744", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/10/03", "asm_name": "ASM31234v1", "asm_submitter": "ebi", "gbrs_paired_asm": "GCA_000312345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/312/345/GCF_000312345.1_ASM31234v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2590418", "genome_size_ungapped": "2555337", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "18", "contig_count": "57", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000312345.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "2485", "protein_coding_gene_count": "2356", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-10-03", "dateModified": "2012-10-03", "datePublished": "2012-10-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium timonense 5401744" ], "sample_taxid": [ "1203190" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.707 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2590418", "Number of Sequences": "18", "Longest Sequences (bp)": "621577", "N50 (bp)": "305362", "Gap Ratio (%)": "1.354260", "GCcontent (%)": "66.8", "Number of CDSs": "2409", "Average Protein Length": "315.2", "Coding Ratio (%)": "87.9", "Number of rRNAs": "3", "Number of tRNAs": "57", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium timonense", "strain": "strain=5401744", "accession": "GCA_000312345.1", "taxid": 441500, "species_taxid": 441500, "relation_to_type": "type", "validated": true, "ani": 99.9998, "matched_fragments": 855, "total_fragments": 857, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium timonense", "strain": "strain=DSM 45434", "accession": "GCA_900105305.1", "taxid": 441500, "species_taxid": 441500, "relation_to_type": "type", "validated": true, "ani": 99.9324, "matched_fragments": 851, "total_fragments": 857, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium senegalense", "strain": "strain=Marseille-P4329", "accession": "GCA_900411315.1", "taxid": 2080750, "species_taxid": 2080750, "relation_to_type": "type", "validated": true, "ani": 83.9881, "matched_fragments": 575, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium jeddahense", "strain": "strain=JCB", "accession": "GCA_000577555.1", "taxid": 1414719, "species_taxid": 1414719, "relation_to_type": "type", "validated": true, "ani": 81.2704, "matched_fragments": 402, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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